RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 FBXO21O94952 628 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 ENGP17813 658 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 PON1P27169 355 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 GNA15P30679 374 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 CD70P32970 193 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 NOVA1P51513 510 aaKnown RBP10.7□□□□□ -0.7
SCN1A-222ENST00000642141 RPS24P62847 133 aaKnown RBP10.7□□□□□ -0.7
SCN1A-222ENST00000642141 PITX1P78337 314 aaPredicted RBP10.7□□□□□ -0.7
SCN1A-222ENST00000642141 EXOC3L4Q17RC7 722 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 DPCR1Q3MIW9 517 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 FAM133BQ5BKY9 247 aaKnown RBP10.7□□□□□ -0.7
SCN1A-222ENST00000642141 ZC3H12AQ5D1E8 599 aaKnown RBP10.7□□□□□ -0.7
SCN1A-222ENST00000642141 SH3PXD2AQ5TCZ1 1133 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 PIK3R6Q5UE93 754 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 DAB2IPQ5VWQ8 1189 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 NADSYN1Q6IA69 706 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 MMS22LQ6ZRQ5 1243 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 TAC4Q86UU9 113 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 ADIPOR2Q86V24 386 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 UNC45BQ8IWX7 931 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 SCML4Q8N228 414 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 CARNMT1Q8N4J0 409 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 DQX1Q8TE96 717 aaKnown RBP10.7□□□□□ -0.7
SCN1A-222ENST00000642141 DDX1Q92499 740 aaKnown RBP10.7□□□□□ -0.7
SCN1A-222ENST00000642141 SIPA1Q96FS4 1042 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 FCRL2Q96LA5 508 aaPredicted RBP10.7□□□□□ -0.7
SCN1A-222ENST00000642141 SLC2A11Q9BYW1 496 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 NUCKS1Q9H1E3 243 aaKnown RBP10.7□□□□□ -0.7
SCN1A-222ENST00000642141 MIR1-1HGQ9H1L0 117 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 CLSTN2Q9H4D0 955 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 PLCB1Q9NQ66 1216 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 COX16Q9P0S2 106 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 GGA2Q9UJY4 613 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 PLA2G4CQ9UP65 541 aa10.7□□□□□ -0.7
SCN1A-222ENST00000642141 PES1O00541 588 aaKnown RBP10.69□□□□□ -0.7
SCN1A-222ENST00000642141 TIMM44O43615 452 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 IGLV3-27P01718 113 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 PABPC1P11940 636 aaKnown RBP10.69□□□□□ -0.7
SCN1A-222ENST00000642141 CD6P30203 668 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 TPMTP51580 245 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 COPAP53621 1224 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 GFPT1Q06210 699 aaPredicted RBP10.69□□□□□ -0.7
SCN1A-222ENST00000642141 DCAF6Q58WW2 860 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 NUGGCQ68CJ6 796 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 MBLAC2Q68D91 279 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 WDTC1Q8N5D0 677 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 MLKLQ8NB16 471 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 DEFB124Q8NES8 71 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 PRCCQ92733 491 aaPredicted RBP10.69□□□□□ -0.7
SCN1A-222ENST00000642141 PRICKLE1Q96MT3 831 aaPredicted RBP10.69□□□□□ -0.7
SCN1A-222ENST00000642141 SLC4A5Q9BY07 1137 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 ITM2CQ9NQX7 267 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 APEX2Q9UBZ4 518 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 STOML2Q9UJZ1 356 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 DNAJC12Q9UKB3 198 aa10.69□□□□□ -0.7
SCN1A-222ENST00000642141 NUP205Q92621 2012 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 GON4LQ3T8J9 2241 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 MEI4A8MW99 385 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 FOXN3O00409 490 aaPredicted RBP10.68□□□□□ -0.7
SCN1A-222ENST00000642141 ACADMP11310 421 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 PRKCSHP14314 528 aaPredicted RBP10.68□□□□□ -0.7
SCN1A-222ENST00000642141 POLR2EP19388 210 aaKnown RBP10.68□□□□□ -0.7
SCN1A-222ENST00000642141 SPINK2P20155 84 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 ACADSBP45954 432 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 ATXN3P54252 364 aaPredicted RBP10.68□□□□□ -0.7
SCN1A-222ENST00000642141 YWHAZP63104 245 aaKnown RBP10.68□□□□□ -0.7
SCN1A-222ENST00000642141 LMAN2Q12907 356 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 PDCLQ13371 301 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 ENPP2Q13822 863 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 EIF4HQ15056 248 aaKnown RBP10.68□□□□□ -0.7
SCN1A-222ENST00000642141 PTPRNQ16849 979 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 DUOXA1Q1HG43 343 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 PLEKHG6Q3KR16 790 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 FSCBQ5H9T9 825 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 SPDYCQ5MJ68 293 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 RAP1GAP2Q684P5 730 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 SLC23A3Q6PIS1 610 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 ENOSF1Q7L5Y1 443 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 SLC47A2Q86VL8 602 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 CIR1Q86X95 450 aaPredicted RBP10.68□□□□□ -0.7
SCN1A-222ENST00000642141 MFN1Q8IWA4 741 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 LGI2Q8N0V4 545 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 ZNF419Q96HQ0 510 aaPredicted RBP10.68□□□□□ -0.7
SCN1A-222ENST00000642141 PPP1R13BQ96KQ4 1090 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 CPXM1Q96SM3 734 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 SIX2Q9NPC8 291 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 EVLQ9UI08 416 aaPredicted RBP10.68□□□□□ -0.7
SCN1A-222ENST00000642141 SLC6A14Q9UN76 642 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 TLR6Q9Y2C9 796 aa10.68□□□□□ -0.7
SCN1A-222ENST00000642141 NPC1O15118 1278 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 SART1O43290 800 aaKnown RBP10.67□□□□□ -0.7
SCN1A-222ENST00000642141 LATS1O95835 1130 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 TRUB2O95900 331 aaKnown RBP10.67□□□□□ -0.7
SCN1A-222ENST00000642141 TOP3BO95985 862 aaKnown RBP10.67□□□□□ -0.7
SCN1A-222ENST00000642141 ATP5BP06576 529 aaKnown RBP10.67□□□□□ -0.7
SCN1A-222ENST00000642141 SERPINF2P08697 491 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 DLDP09622 509 aaKnown RBP10.67□□□□□ -0.7
SCN1A-222ENST00000642141 CSKP41240 450 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 CTSOP43234 321 aaPredicted RBP10.67□□□□□ -0.7
SCN1A-222ENST00000642141 RPL34P49207 117 aaKnown RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms