RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	CTNNA1	P35221	906 aa	Known RBP	12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	ARL4A	P40617	200 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	CETN2	P41208	172 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	ZNF135	P52742	658 aa	Predicted RBP	12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	GNG11	P61952	73 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	FCHO2	Q0JRZ9	810 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	GRM2	Q14416	872 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	PPP6R3	Q5H9R7	873 aa	Predicted RBP	12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	MS4A13	Q5J8X5	152 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	KCNT1	Q5JUK3	1230 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	TTC39B	Q5VTQ0	682 aa	Predicted RBP	12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	POTEH	Q6S545	545 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904		Q6ZNB5	142 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	NT5DC3	Q86UY8	548 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	ZSCAN30	Q86W11	494 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	CCDC117	Q8IWD4	279 aa	Predicted RBP	12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	ST13P5	Q8NFI4	369 aa	Predicted RBP	12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	RSPRY1	Q96DX4	576 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	C1orf74	Q96LT6	269 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	ASB2	Q96Q27	587 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	PEBP4	Q96S96	227 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	OSBPL2	Q9H1P3	480 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	BRD9	Q9H8M2	597 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	OR12D3	Q9UGF7	316 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	LIMD1	Q9UGP4	676 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	WNT6	Q9Y6F9	365 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	NUP210	Q8TEM1	1887 aa	Predicted RBP	12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	NOTCH4	Q99466	2003 aa		12.95	□□□□□ -0.34
ABCD4-223	ENST00000555904	LRRD1	A4D1F6	860 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904		H3BRJ5	948 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	CHAD	O15335	359 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	DAPK3	O43293	454 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	CREB3	O43889	395 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	GREM1	O60565	184 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	SRGAP2	O75044	1071 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	ADH1C	P00326	375 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	KRT1	P04264	644 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	RARA	P10276	462 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	TCF4	P15884	667 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	IL1R2	P27930	398 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	GDI1	P31150	447 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	HTR7	P34969	479 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	MLLT6	P55198	1093 aa	Predicted RBP	12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	CDH6	P55285	790 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	RWDD2B	P57060	319 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	TAS2R40	P59535	323 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	TPI1	P60174	286 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	NR1H3	Q13133	447 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	PDK2	Q15119	407 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	RPS6KA1	Q15418	735 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	RAP1GAP2	Q684P5	730 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	CCDC50	Q8IVM0	306 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	LGI2	Q8N0V4	545 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	C17orf53	Q8N3J3	647 aa	Predicted RBP	12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	CPXM2	Q8N436	756 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	CPA6	Q8N4T0	437 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	HJURP	Q8NCD3	748 aa	Predicted RBP	12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	IRF7	Q92985	503 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	WBP2	Q969T9	261 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	RBM41	Q96IZ5	413 aa	Known RBP	12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	RPRD1A	Q96P16	312 aa	Predicted RBP	12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	CALN1	Q9BXU9	219 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	IRX2	Q9BZI1	471 aa	Predicted RBP	12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	KCNK12	Q9HB15	430 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	DONSON	Q9NYP3	566 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	STIM2	Q9P246	746 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	XPO7	Q9UIA9	1087 aa	Known RBP	12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	STOML2	Q9UJZ1	356 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	VANGL2	Q9ULK5	521 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	JRKL	Q9Y4A0	524 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	HS3ST4	Q9Y661	456 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	ANAPC1	Q9H1A4	1944 aa		12.94	□□□□□ -0.34
ABCD4-223	ENST00000555904	LOC730098	B7Z3J9	87 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904		E9PAM4	449 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	TACR2	P21452	398 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	CTNNA2	P26232	953 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	L1CAM	P32004	1257 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	DNA2	P51530	1060 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	VCP	P55072	806 aa	Known RBP	12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	NRG1	Q02297	640 aa	Predicted RBP	12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	ZP2	Q05996	745 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	AUH	Q13825	339 aa	Known RBP	12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	DPYSL2	Q16555	572 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	ANO4	Q32M45	955 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	MPPE1	Q53F39	396 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	FAM133B	Q5BKY9	247 aa	Known RBP	12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	PIK3R6	Q5UE93	754 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	NADSYN1	Q6IA69	706 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	RWDD4	Q6NW29	188 aa	Known RBP	12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	CPNE8	Q86YQ8	564 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	FAM217A	Q8IXS0	508 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	KATNAL2	Q8IYT4	538 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	RIN3	Q8TB24	985 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	CSGALNACT1	Q8TDX6	532 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	DDI1	Q8WTU0	396 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	TBC1D31	Q96DN5	1066 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	TMA16	Q96EY4	203 aa	Known RBP	12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	LRRC3B	Q96PB8	259 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	ANLN	Q9NQW6	1124 aa		12.93	□□□□□ -0.34
ABCD4-223	ENST00000555904	SPHK2	Q9NRA0	654 aa		12.93	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms