RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 AP5Z1O43299 807 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 ZNF217O75362 1048 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 IGLV3-27P01718 113 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 FYNP06241 537 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 PON1P27169 355 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 RPL34P49207 117 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 SLC11A2P49281 568 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 LMAN2Q12907 356 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 EIF4HQ15056 248 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 DPCR1Q3MIW9 517 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 FUT11Q495W5 492 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 HSP90AA4PQ58FG1 418 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 NUGGCQ68CJ6 796 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 TMEM215Q68D42 235 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 UNC45BQ8IWX7 931 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 ADAM32Q8TC27 787 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 DQX1Q8TE96 717 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 MRGPRX1Q96LB2 322 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 FAM81BQ96LP2 452 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 NUP62CLQ9H1M0 184 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 CYTH4Q9UIA0 394 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 CACNA1EQ15878 2313 aa16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 NYNRINQ9P2P1 1898 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-205ENST00000472524 GTPBP10A4D1E9 387 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 E5RJQ4 531 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 CAPN9O14815 690 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 NPC1O15118 1278 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 SART1O43290 800 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 ACSL4O60488 711 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 SYNCRIPO60506 623 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 TBL1XO60907 577 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 CFIP05156 583 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 PRKCHP24723 683 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 HLA-FP30511 346 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 SLC6A4P31645 630 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 RING1Q06587 406 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 MEA1Q16626 185 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 MAN2A1Q16706 1144 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 FAM133BQ5BKY9 247 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 SPDYCQ5MJ68 293 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 CHST9Q7L1S5 443 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 CACUL1Q86Y37 369 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 PASD1Q8IV76 773 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 FAM114A1Q8IWE2 563 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 CYB5D2Q8WUJ1 264 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 SERPINB11Q96P15 392 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 TMEM121BQ9BXQ6 578 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 SLC4A5Q9BY07 1137 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 THAP9Q9H5L6 903 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 PRDM16Q9HAZ2 1276 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 ABCB8Q9NUT2 735 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 STIM2Q9P246 746 aa16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 AJAP1Q9UKB5 411 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-205ENST00000472524 PAPSS1O43252 624 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 NDUFS2O75306 463 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 MOCS2O96007 188 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 EPHX1P07099 455 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 HLA-EP13747 358 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 PRKCSHP14314 528 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 ZNF33AQ06730 810 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 PDCLQ13371 301 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 ENPP2Q13822 863 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 E2F5Q15329 346 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 PIK3R6Q5UE93 754 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 SYPL2Q5VXT5 272 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 PEAR1Q5VY43 1037 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 NADSYN1Q6IA69 706 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 SLC23A3Q6PIS1 610 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 SERPINA13PQ6UXR4 307 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 TAC4Q86UU9 113 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 WFDC5Q8TCV5 224 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 WFIKKN2Q8TEU8 576 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 STK32AQ8WU08 396 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 SHC3Q92529 594 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 FCRL2Q96LA5 508 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 ADAM33Q9BZ11 813 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 MKRN2Q9H000 416 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 SIX2Q9NPC8 291 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 TJP2Q9UDY2 1190 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 DACH1Q9UI36 760 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 GGA2Q9UJY4 613 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 ZMIZ1Q9ULJ6 1067 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 ZZEF1O43149 2961 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 SPEGQ15772 3267 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 PCDH15Q96QU1 1955 aa16.33■□□□□ 0.2
CCDC88B-205ENST00000472524 PCNX2A6NKB5 2137 aa16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 PES1O00541 588 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 TIMM44O43615 452 aa16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 PNMA6AP0CW24 399 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 PABPC1P11940 636 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 FNDC3BQ53EP0 1204 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 TMEM110Q86TL2 294 aa16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 SLC41A1Q8IVJ1 513 aa16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 AHI1Q8N157 1196 aa16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 ZNF366Q8N895 744 aa16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 HSPA12BQ96MM6 686 aa16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 PRICKLE1Q96MT3 831 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 DDX50Q9BQ39 737 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 TRIM62Q9BVG3 475 aa16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 SCNM1Q9BWG6 230 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms