RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 RNF186Q9NXI6 227 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.35□□□□□ -0.279e-8■■■■■ 27
SPTLC1-201ENST00000262554 TTLL3Q9Y4R7 772 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 CAPN7Q9Y6W3 813 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 H0YHG0 523 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 RNF103O00237 685 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 DCLK1O15075 740 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 BDNFP23560 247 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 HCAR3P49019 387 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 TPI1P60174 286 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 MTFR1Q15390 333 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 PDK4Q16654 411 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 OVOS1Q6IE37 1185 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 DCLRE1AQ6PJP8 1040 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 SLC26A11Q86WA9 606 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 COLGALT1Q8NBJ5 622 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 CCNYQ8ND76 341 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 HASPINQ8TF76 798 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 RSPH1Q8WYR4 309 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 EBNA1BP2Q99848 306 aaKnown RBP13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 TRIM62Q9BVG3 475 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 RHOBTB2Q9BYZ6 727 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 PITPNM3Q9BZ71 974 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 RAD54BQ9Y620 910 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 MAD1L1Q9Y6D9 718 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 PTPRDP23468 1912 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 FRMPD3Q5JV73 1810 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 PATJQ8NI35 1801 aa13.34□□□□□ -0.27
SPTLC1-201ENST00000262554 TM9SF1O15321 606 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 APOEP02649 317 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 PRKCHP24723 683 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 ZNF135P52742 658 aaPredicted RBP13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 ACLYP53396 1101 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 TSPY1Q01534 308 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 SLC1A5Q15758 541 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 PM20D1Q6GTS8 502 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 LVRNQ6Q4G3 990 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 CD300LGQ6UXG3 332 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 RGS9BPQ6ZS82 235 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 ZNF534Q76KX8 674 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 TRPM8Q7Z2W7 1104 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 LRRC6Q86X45 466 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 CTAGE3PQ8IX95 158 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 SCML4Q8N228 414 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 LRRC8CQ8TDW0 803 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 P2RY11Q96G91 374 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 SIGLEC10Q96LC7 697 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 ARL2BPQ9Y2Y0 163 aa13.33□□□□□ -0.27
SPTLC1-201ENST00000262554 PCNTO95613 3336 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 FAM72CH0Y354 149 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 MLNP12872 115 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 ERCC2P18074 760 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 HOXD10P28358 340 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 CAP1Q01518 475 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 SEMA3BQ13214 749 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 NOGQ13253 232 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 LGSNQ5TDP6 509 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 FAM72AQ5TYM5 149 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 TTC39BQ5VTQ0 682 aaPredicted RBP13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 FAM72DQ6L9T8 149 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 UNC5AQ6ZN44 842 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 BHLHA9Q7RTU4 235 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 PRPF39Q86UA1 669 aaKnown RBP13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 ZNF598Q86UK7 904 aaKnown RBP13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 FAM72BQ86X60 149 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 PPM1NQ8N819 430 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 BANPQ8N9N5 519 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 EDEM1Q92611 657 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 SUSD3Q96L08 255 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 PKMYT1Q99640 499 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 COLEC11Q9BWP8 271 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 PRDM12Q9H4Q4 367 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 WDCPQ9H6R7 721 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 EIF2B3Q9NR50 452 aaKnown RBP13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 SEPT10Q9P0V9 454 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 ZNF180Q9UJW8 692 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 NR2E3Q9Y5X4 410 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 NLRC5Q86WI3 1866 aa13.33□□□□□ -0.28
SPTLC1-201ENST00000262554 MYO18AQ92614 2054 aaKnown RBP13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 GOLGA8RI6L899 631 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 INPPL1O15357 1258 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 NCAM2O15394 837 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 KRT37O76014 449 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 TYMPP19971 482 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 YY1P25490 414 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 CXCR3P49682 368 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 FAAP100Q0VG06 881 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 IFRD2Q12894 506 aaPredicted RBP13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 PARP6Q2NL67 630 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 BSPRYQ5W0U4 402 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 GLB1LQ6UWU2 654 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 CTU1Q7Z7A3 348 aaKnown RBP13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 SMC1BQ8NDV3 1235 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 OR10T2Q8NGX3 314 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 GSDMBQ8TAX9 411 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 TCP10LQ8TDR4 215 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 EPAS1Q99814 870 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 ANLNQ9NQW6 1124 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 RGS18Q9NS28 235 aa13.32□□□□□ -0.28
SPTLC1-201ENST00000262554 TMLHEQ9NVH6 421 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms