RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 BST1Q10588 318 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 CCL15Q16663 113 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 NBPF20Q3BBV1 942 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 NUDCD3Q8IVD9 361 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 DEFB106AQ8N104 65 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 NETO2Q8NC67 525 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 KCNV2Q8TDN2 545 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 HSFY1Q96LI6 401 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 NUDCD1Q96RS6 583 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 MIPEPQ99797 713 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 TLE6Q9H808 572 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 COX16Q9P0S2 106 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 GTF2IRD1Q9UHL9 959 aa13.58□□□□□ -0.24
LDLR-203ENST00000535915 NRCAMQ92823 1304 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 WDR27A2RRH5 827 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 DYNC1LI2O43237 492 aaPredicted RBP13.57□□□□□ -0.24
LDLR-203ENST00000535915 GM2AP17900 193 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 TAF6P49848 677 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 SERPINB9P50453 376 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 ADIGQ0VDE8 80 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 AP1B1Q10567 949 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 CHI3L2Q15782 390 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 DCAF6Q58WW2 860 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 IQSEC1Q6DN90 963 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 BZW1Q7L1Q6 419 aaKnown RBP13.57□□□□□ -0.24
LDLR-203ENST00000535915 COLGALT1Q8NBJ5 622 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 PTCD3Q96EY7 689 aaKnown RBP13.57□□□□□ -0.24
LDLR-203ENST00000535915 OXNAD1Q96HP4 312 aaPredicted RBP13.57□□□□□ -0.24
LDLR-203ENST00000535915 BTBD10Q9BSF8 475 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 FZD10Q9ULW2 581 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 CENPFP49454 3210 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 A0A0A0MRY4 1105 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 HMX2A2RU54 273 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 XPOTO43592 962 aaKnown RBP13.57□□□□□ -0.24
LDLR-203ENST00000535915 HUS1O60921 280 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 DGKIO75912 1065 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 CALB2P22676 271 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 TKTP29401 623 aaKnown RBP13.57□□□□□ -0.24
LDLR-203ENST00000535915 PNPLA4P41247 253 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 CRADDP78560 199 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 SLC25A52Q3SY17 297 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 WASHC2DQ5SRD0 308 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 PIGZQ86VD9 579 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 ADGRF2Q8IZF7 708 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 UNC5BQ8IZJ1 945 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 DNAJB3Q8WWF6 145 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 TNIP3Q96KP6 325 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 SPATA13Q96N96 652 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 OLFM3Q96PB7 478 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 CADM1Q9BY67 442 aaKnown RBP13.57□□□□□ -0.24
LDLR-203ENST00000535915 RNF39Q9H2S5 420 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 DENND2DQ9H6A0 471 aaPredicted RBP13.57□□□□□ -0.24
LDLR-203ENST00000535915 PIH1D1Q9NWS0 290 aaKnown RBP13.57□□□□□ -0.24
LDLR-203ENST00000535915 MKS1Q9NXB0 559 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 GDAP2Q9NXN4 497 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 USP3Q9Y6I4 520 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 DOCK3Q8IZD9 2030 aa13.57□□□□□ -0.24
LDLR-203ENST00000535915 SMIM35A0A1B0GVV1 85 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 HACD1B0YJ81 288 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 GYG2O15488 501 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 MFSD11O43934 449 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 CRHR1P34998 444 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 FDFT1P37268 417 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 GRB14Q14449 540 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 C11orf91Q3C1V1 193 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 SV2CQ496J9 727 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 TTC7BQ86TV6 843 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 PDCD7Q8N8D1 485 aaKnown RBP13.56□□□□□ -0.24
LDLR-203ENST00000535915 TTC8Q8TAM2 541 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 TMEM40Q8WWA1 233 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 C7orf26Q96N11 449 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 CEP41Q9BYV8 373 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 ARHGEF4Q9NR80 690 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 TMPRSS4Q9NRS4 437 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 MORF4L1Q9UBU8 362 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 H0Y3Z8 333 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 FCHO1O14526 889 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 XPO1O14980 1071 aaKnown RBP13.56□□□□□ -0.24
LDLR-203ENST00000535915 ENTPD5O75356 428 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 SKAP2O75563 359 aaPredicted RBP13.56□□□□□ -0.24
LDLR-203ENST00000535915 STK10O94804 968 aaKnown RBP13.56□□□□□ -0.24
LDLR-203ENST00000535915 KITP10721 976 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 ESRRAP11474 423 aaPredicted RBP13.56□□□□□ -0.24
LDLR-203ENST00000535915 GCKP35557 465 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 SLC8A3P57103 927 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 SOX4Q06945 474 aaPredicted RBP13.56□□□□□ -0.24
LDLR-203ENST00000535915 PCBP1Q15365 356 aaKnown RBP eCLIP13.56□□□□□ -0.24
LDLR-203ENST00000535915 BSPRYQ5W0U4 402 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 ALYREFQ86V81 257 aaKnown RBP13.56□□□□□ -0.24
LDLR-203ENST00000535915 ARID3BQ8IVW6 561 aaPredicted RBP13.56□□□□□ -0.24
LDLR-203ENST00000535915 B3GALNT2Q8NCR0 500 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 MS4A4AQ96JQ5 239 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 ZNF570Q96NI8 536 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 SLC5A4Q9NY91 659 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 MOCS1Q9NZB8 636 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 SEPT10Q9P0V9 454 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 SIRPGQ9P1W8 387 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 ARMCX1Q9P291 453 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 SHROOM3Q8TF72 1996 aa13.56□□□□□ -0.24
LDLR-203ENST00000535915 RNF103O00237 685 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms