RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SMARCD2Q92925 531 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 WBP2Q969T9 261 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 PHOX2BQ99453 314 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 ARHGEF3Q9NR81 526 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 DMAC2Q9NW81 257 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 DUS2Q9NX74 493 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 ZNF180Q9UJW8 692 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 CHMP2BQ9UQN3 213 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 BACE2Q9Y5Z0 518 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 OTOL1A6NHN0 477 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 WASH3PC4AMC7 463 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 ABLIM3O94929 683 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 TIE1P35590 1138 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 MYL5Q02045 173 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 NSUN2Q08J23 767 aaKnown RBP eCLIP8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 CBX3Q13185 183 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 DRAP1Q14919 205 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 DCAF6Q58WW2 860 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 C6orf183Q5T699 404 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 TPGS2Q68CL5 300 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 TRIM67Q6ZTA4 783 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 PEX5LQ8IYB4 626 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 NUP93Q8N1F7 819 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 EMC1Q8N766 993 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 VPS37AQ8NEZ2 397 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 DDI1Q8WTU0 396 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 NSMCE1Q8WV22 266 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.21□□□□□ -1.15e-6■■■■□ 19.4
LIMCH1-219ENST00000514096 FBRSL1Q9HCM7 1045 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 FNIP2Q9P278 1114 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 AHCTF1Q8WYP5 2266 aa8.21□□□□□ -1.1
LIMCH1-219ENST00000514096 KRBA1A5PL33 1030 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 TMEM110-MUSTN1A8MSY1 372 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 H3BQF6 201 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 EPHB6O15197 1021 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 ATMINO43313 823 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 STX10O60499 249 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 RHOXF2BP0C7M4 288 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 PSMC3P17980 439 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 TYMPP19971 482 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 CREMQ03060 361 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 EDRF1Q3B7T1 1238 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 ZCWPW2Q504Y3 356 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 SLC44A4Q53GD3 710 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 CFAP58Q5T655 872 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 GRAMD4Q6IC98 578 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 PDXDC1Q6P996 788 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 FAM124AQ86V42 546 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 TMEM86AQ8N2M4 240 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 CHCHD4Q8N4Q1 142 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 TOP6BLQ8N6T0 577 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 GANCQ8TET4 914 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 SORCS1Q8WY21 1168 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 SMARCD1Q96GM5 515 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 RHOXF2Q9BQY4 288 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 C11orf70Q9BRQ4 267 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 DRC3Q9H069 523 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 NMUR1Q9HB89 426 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 ZDHHC7Q9NXF8 308 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 C6orf203Q9P0P8 240 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 IFNKQ9P0W0 207 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 RWDD2AQ9UIY3 292 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 TRAV19A0A0A6YYK7 116 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 SRGAP2O75044 1071 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 ARID5BQ14865 1188 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 BMT2Q1RMZ1 405 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 NAA35Q5VZE5 725 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 ANO7Q6IWH7 933 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 DENND1BQ6P3S1 775 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 C15orf39Q6ZRI6 1047 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 BPIFB1Q8TDL5 484 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 ALS2CR12Q96Q35 445 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 USTQ9Y2C2 406 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 TMEM98Q9Y2Y6 226 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 DMXL1Q9Y485 3027 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 PDHA1P08559 390 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 RARGP13631 454 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 ZFXP17010 805 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 KLC1Q07866 573 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 P3H1Q32P28 736 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 TRIM65Q6PJ69 517 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 VITQ6UXI7 678 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 PRR23CQ6ZRP0 262 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 CLEC20AQ6ZU45 233 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 CIR1Q86X95 450 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 CMTM8Q8IZV2 173 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 SLC20A1Q8WUM9 679 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 GOLGA1Q92805 767 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 PSMG2Q969U7 264 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 ZNF653Q96CK0 615 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 KREMEN1Q96MU8 473 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 LMAN1LQ9HAT1 526 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 SIT1Q9Y3P8 196 aa8.2□□□□□ -1.1
LIMCH1-219ENST00000514096 VWA8A3KMH1 1905 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 YJEFN3A6XGL0 299 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 E7ENQ6 273 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 F8VZ95 297 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 KIAA0391O15091 583 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 RAD23BP54727 409 aa8.19□□□□□ -1.1
LIMCH1-219ENST00000514096 ARPC4P59998 168 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms