RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 TMCO2Q7Z6W1 182 aaPredicted RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 WDR5BQ86VZ2 330 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 TRIM48Q8IWZ4 208 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 MAB21L3Q8N8X9 362 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 GRAMD1AQ96CP6 724 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 CAAP1Q9H8G2 361 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 XPO7Q9UIA9 1087 aaKnown RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 NVLO15381 856 aaKnown RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 PCDH8O95206 1070 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 ARIH2O95376 493 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 GUCA1CO95843 209 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 POU2F2P09086 479 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 SNRPFP62306 86 aaKnown RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 MRPS9P82933 396 aaKnown RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 AP1B1Q10567 949 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 PON2Q15165 354 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 BMP2KLQ5H9B9 411 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 NUGGCQ68CJ6 796 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 OOSP2Q86WS3 158 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 CCDC60Q8IWA6 550 aaPredicted RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 ATP6V0D2Q8N8Y2 350 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 NXF1Q9UBU9 619 aaKnown RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 ARL5CA6NH57 179 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 TTI1O43156 1089 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 FGFR4P22455 802 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 RPS6KB1P23443 525 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 FYB2Q5VWT5 728 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 RAPH1Q70E73 1250 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 METTL3Q86U44 580 aaKnown RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 OR8D1Q8WZ84 308 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 NAT6Q93015 286 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 ASIC4Q96FT7 647 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 SENP8Q96LD8 212 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 REPIN1Q9BWE0 567 aaKnown RBP8.38□□□□□ -1.07
LIMS1-203ENST00000393310 NFKBIZQ9BYH8 718 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 PCED1AQ9H1Q7 454 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 ANLNQ9NQW6 1124 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 MAD2L2Q9UI95 211 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 SH3BGRL2Q9UJC5 107 aa8.38□□□□□ -1.07
LIMS1-203ENST00000393310 FAM186AA6NE01 2351 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 E2F3O00716 465 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 SKAP2O75563 359 aaPredicted RBP8.37□□□□□ -1.07
LIMS1-203ENST00000393310 ATG7O95352 703 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 C22orf31O95567 290 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 C1SP09871 688 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 AKAP5P24588 427 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 SOX11P35716 441 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 MLLT6P55198 1093 aaPredicted RBP8.37□□□□□ -1.07
LIMS1-203ENST00000393310 SRSF11Q05519 484 aaKnown RBP8.37□□□□□ -1.07
LIMS1-203ENST00000393310 CWF19L1Q69YN2 538 aaKnown RBP8.37□□□□□ -1.07
LIMS1-203ENST00000393310 PPP1R2P3Q6NXS1 205 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 GPR155Q7Z3F1 870 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 CDC26Q8NHZ8 85 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 FUBP3Q96I24 572 aaKnown RBP eCLIP8.37□□□□□ -1.073e-6■■■■□ 21.1
LIMS1-203ENST00000393310 DUSP23Q9BVJ7 150 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 FOXQ1Q9C009 403 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 ZMYND12Q9H0C1 365 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 TMEM134Q9H6X4 195 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 XAB2Q9HCS7 855 aaKnown RBP8.37□□□□□ -1.07
LIMS1-203ENST00000393310 GTF2A1LQ9UNN4 478 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 THSD7BQ9C0I4 1608 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 GOLGA8RI6L899 631 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 LRCH4O75427 683 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 PDE5AO76074 875 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 PRKACAP17612 351 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 ME1P48163 572 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 CCT5P48643 541 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 COTL1Q14019 142 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 CYLC2Q14093 348 aaPredicted RBP8.37□□□□□ -1.07
LIMS1-203ENST00000393310 PTK2BQ14289 1009 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 ALFQ53S48 1182 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 CNNM4Q6P4Q7 775 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 ERICH5Q6P6B1 374 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 ARID3BQ8IVW6 561 aaPredicted RBP8.37□□□□□ -1.07
LIMS1-203ENST00000393310 ARFGAP2Q8N6H7 521 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 UBL4BQ8N7F7 174 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 OR6C4Q8NGE1 309 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 USP28Q96RU2 1077 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 RXFP1Q9HBX9 757 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 ANO10Q9NW15 660 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 DPP3Q9NY33 737 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 MTRRQ9UBK8 725 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 NAGPAQ9UK23 515 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 VIRMAQ69YN4 1812 aaKnown RBP8.37□□□□□ -1.07
LIMS1-203ENST00000393310 ANKRD33BA6NCL7 494 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 TNFRSF10BO14763 440 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 TBX10O75333 385 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 HEXIM1O94992 359 aaKnown RBP8.37□□□□□ -1.07
LIMS1-203ENST00000393310 KLF8O95600 359 aaPredicted RBP8.37□□□□□ -1.07
LIMS1-203ENST00000393310 IGHEP01854 428 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 ZNF806P0C7X5 589 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 MX2P20592 715 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 NTSR1P30989 418 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 STAT1P42224 750 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 PMS1P54277 932 aaKnown RBP8.37□□□□□ -1.07
LIMS1-203ENST00000393310 HDAC4P56524 1084 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 SETMARQ53H47 684 aaPredicted RBP8.37□□□□□ -1.07
LIMS1-203ENST00000393310 TCEAL8Q8IYN2 117 aa8.37□□□□□ -1.07
LIMS1-203ENST00000393310 ZBTB8BQ8NAP8 495 aaPredicted RBP8.37□□□□□ -1.07
LIMS1-203ENST00000393310 DEFB124Q8NES8 71 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms