RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 TRIP4Q15650 581 aaPredicted RBP16.05■□□□□ 0.16
UPF1-206ENST00000598471 PPP2R5EQ16537 467 aa16.05■□□□□ 0.16
UPF1-206ENST00000598471 LONRF2Q1L5Z9 754 aa16.05■□□□□ 0.16
UPF1-206ENST00000598471 ATP13A4Q4VNC1 1196 aa16.05■□□□□ 0.16
UPF1-206ENST00000598471 CYP4V2Q6ZWL3 525 aaPredicted RBP16.05■□□□□ 0.16
UPF1-206ENST00000598471 VSIG1Q86XK7 387 aa16.05■□□□□ 0.16
UPF1-206ENST00000598471 TMC8Q8IU68 726 aa16.05■□□□□ 0.16
UPF1-206ENST00000598471 CCDC185Q8N715 623 aa16.05■□□□□ 0.16
UPF1-206ENST00000598471 RNF25Q96BH1 459 aaPredicted RBP16.05■□□□□ 0.16
UPF1-206ENST00000598471 ACSF2Q96CM8 615 aaPredicted RBP16.05■□□□□ 0.16
UPF1-206ENST00000598471 RPGRIP1Q96KN7 1286 aa16.05■□□□□ 0.16
UPF1-206ENST00000598471 DHX35Q9H5Z1 703 aaKnown RBP16.05■□□□□ 0.16
UPF1-206ENST00000598471 CCSER2Q9H7U1 834 aa16.05■□□□□ 0.16
UPF1-206ENST00000598471 SFXN1Q9H9B4 322 aa16.05■□□□□ 0.16
UPF1-206ENST00000598471 IL21Q9HBE4 155 aa16.05■□□□□ 0.16
UPF1-206ENST00000598471 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.05■□□□□ 0.16
UPF1-206ENST00000598471 CALCOCO1Q9P1Z2 691 aa16.05■□□□□ 0.16
UPF1-206ENST00000598471 SLC12A6Q9UHW9 1150 aa16.05■□□□□ 0.16
UPF1-206ENST00000598471 ZNF638Q14966 1978 aaKnown RBP16.04■□□□□ 0.16
UPF1-206ENST00000598471 GOLGA6L10A0A0M3HER8 536 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 SLC12A8A0AV02 714 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 CTAGE15A4D2H0 777 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 MSI1O43347 362 aaKnown RBP16.04■□□□□ 0.16
UPF1-206ENST00000598471 TADA3O75528 432 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 FGGP02679 453 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 CTAGE8P0CG41 777 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 PFKLP17858 780 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 KDELR1P24390 212 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 PTPN7P35236 360 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 ZNF135P52742 658 aaPredicted RBP16.04■□□□□ 0.16
UPF1-206ENST00000598471 EPHA5P54756 1037 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 DPYSL2Q16555 572 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 ARHGAP15Q53QZ3 475 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 TFDP3Q5H9I0 405 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 SPOCD1Q6ZMY3 1216 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 PDZD4Q76G19 769 aaPredicted RBP16.04■□□□□ 0.16
UPF1-206ENST00000598471 CTAGE6Q86UF2 777 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 MIB1Q86YT6 1006 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 CTAGE4Q8IX94 777 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 HS6ST3Q8IZP7 471 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 ATP6V0D2Q8N8Y2 350 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 RAPGEF5Q92565 580 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 MS4A14Q96JA4 679 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 CALN1Q9BXU9 219 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 LRRC3Q9BY71 257 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 OSBPL8Q9BZF1 889 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 TKTL2Q9H0I9 626 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 ATXN3LQ9H3M9 355 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 PIDD1Q9HB75 910 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 TRPC7Q9HCX4 862 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 GPATCH2LQ9NWQ4 482 aa16.04■□□□□ 0.16
UPF1-206ENST00000598471 MTCL1Q9Y4B5 1905 aaKnown RBP16.04■□□□□ 0.16
UPF1-206ENST00000598471 CCDC195A0A1B0GUA6 201 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 ZNF487B1APH4 448 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 ZNF197O14709 1029 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 COCHO43405 550 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 SLU7O95391 586 aaKnown RBP16.03■□□□□ 0.16
UPF1-206ENST00000598471 TBX18O95935 607 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 OAS1P00973 400 aaKnown RBP16.03■□□□□ 0.16
UPF1-206ENST00000598471 DDX6P26196 483 aaKnown RBP eCLIP16.03■□□□□ 0.16
UPF1-206ENST00000598471 ARL4AP40617 200 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 COG7P83436 770 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 RING1Q06587 406 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 EIF4EBP2Q13542 120 aaPredicted RBP16.03■□□□□ 0.16
UPF1-206ENST00000598471 ZC3H12AQ5D1E8 599 aaKnown RBP16.03■□□□□ 0.16
UPF1-206ENST00000598471 ACBD5Q5T8D3 534 aaPredicted RBP16.03■□□□□ 0.16
UPF1-206ENST00000598471 NUGGCQ68CJ6 796 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 MFSD7Q6UXD7 560 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 SLC13A5Q86YT5 568 aaPredicted RBP16.03■□□□□ 0.16
UPF1-206ENST00000598471 UNC45BQ8IWX7 931 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.03■□□□□ 0.16
UPF1-206ENST00000598471 ZNF670Q9BS34 389 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 CARD6Q9BX69 1037 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 MAK16Q9BXY0 300 aaKnown RBP16.03■□□□□ 0.16
UPF1-206ENST00000598471 IGFLR1Q9H665 355 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 PCDH18Q9HCL0 1135 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 ARHGEF38Q9NXL2 777 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 RCOR3Q9P2K3 495 aaPredicted RBP16.03■□□□□ 0.16
UPF1-206ENST00000598471 ZMYM5Q9UJ78 669 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 EFR3BQ9Y2G0 817 aa16.03■□□□□ 0.16
UPF1-206ENST00000598471 CLUHO75153 1309 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 SOBPA7XYQ1 873 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 H3BRJ5 948 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 RIOK3O14730 519 aaKnown RBP16.02■□□□□ 0.16
UPF1-206ENST00000598471 TJP3O95049 919 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 RHOP08100 348 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 MBL2P11226 248 aaPredicted RBP16.02■□□□□ 0.16
UPF1-206ENST00000598471 L1CAMP32004 1257 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 CDKN2BP42772 138 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 TFDP2Q14188 446 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 TCEAL5Q5H9L2 206 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 PPP6R3Q5H9R7 873 aaPredicted RBP16.02■□□□□ 0.16
UPF1-206ENST00000598471 AADACL2Q6P093 401 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 GAREM2Q75VX8 874 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 ZNF572Q7Z3I7 529 aaPredicted RBP16.02■□□□□ 0.16
UPF1-206ENST00000598471 TMEM150AQ86TG1 271 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 EFHBQ8N7U6 833 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 FAM71BQ8TC56 605 aa16.02■□□□□ 0.16
UPF1-206ENST00000598471 SMG7Q92540 1137 aaKnown RBP16.02■□□□□ 0.16
UPF1-206ENST00000598471 PLD4Q96BZ4 506 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms