RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 SPATA6Q9NWH7 488 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-213ENST00000481019 CALCOCO1Q9P1Z2 691 aa12.76□□□□□ -0.37
PTPRF-213ENST00000481019 TBC1D14Q9P2M4 693 aa12.76□□□□□ -0.37
PTPRF-213ENST00000481019 MYO6Q9UM54 1294 aa12.76□□□□□ -0.37
PTPRF-213ENST00000481019 CAPN11Q9UMQ6 739 aa12.76□□□□□ -0.37
PTPRF-213ENST00000481019 FRYLO94915 3013 aa12.76□□□□□ -0.37
PTPRF-213ENST00000481019 GOLGA6L7A0A1B0GV03 622 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 K7EQS6 105 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 GFRA2O00451 464 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 HOXC11O43248 304 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-213ENST00000481019 IGLV3-27P01718 113 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 CYP1A1P04798 512 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-213ENST00000481019 TDGF1P13385 188 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 TFE3P19532 575 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-213ENST00000481019 GABRB2P47870 512 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 SGSHP51688 502 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 ZBED6P86452 979 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 SATB1Q01826 763 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 NHLH1Q02575 133 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 KDSRQ06136 332 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 OTUD1Q5VV17 481 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-213ENST00000481019 NADSYN1Q6IA69 706 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 TRNP1Q6NT89 227 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 IRF2BP2Q7Z5L9 587 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 XYLT1Q86Y38 959 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 LRRC8AQ8IWT6 810 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 DEFB106AQ8N104 65 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 TMEM35BQ8NCS4 154 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 SLC30A5Q8TAD4 765 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 OTUB2Q96DC9 234 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 FCRL2Q96LA5 508 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-213ENST00000481019 SLC2A13Q96QE2 648 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 SYT11Q9BT88 431 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 ZDHHC4Q9NPG8 344 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 OLA1Q9NTK5 396 aaKnown RBP12.75□□□□□ -0.37
PTPRF-213ENST00000481019 PLK2Q9NYY3 685 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 XPO7Q9UIA9 1087 aaKnown RBP12.75□□□□□ -0.37
PTPRF-213ENST00000481019 LSM7Q9UK45 103 aaKnown RBP12.75□□□□□ -0.37
PTPRF-213ENST00000481019 HCN2Q9UL51 889 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 STRIP2Q9ULQ0 834 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 CLEC4EQ9ULY5 219 aa12.75□□□□□ -0.37
PTPRF-213ENST00000481019 HBS1LQ9Y450 684 aaKnown RBP12.75□□□□□ -0.37
PTPRF-213ENST00000481019 LRRC53A6NM62 1247 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 NEDD8-MDP1E9PL57 170 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 TSPAN3O60637 253 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 RNF40O75150 1001 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 GJB6O95452 261 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 ADH1CP00326 375 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 IGLV3-25P01717 112 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 SP9P0CG40 484 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 NUBP1P53384 320 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 SEC13P55735 322 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 YWHAZP63104 245 aaKnown RBP12.74□□□□□ -0.37
PTPRF-213ENST00000481019 SLC6A3Q01959 620 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 GAD2Q05329 585 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 GOLGA8FQ08AF8 430 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 DMWDQ09019 674 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 GOLGA8DPQ0D2H9 430 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 GRSF1Q12849 480 aaKnown RBP eCLIP12.74□□□□□ -0.37
PTPRF-213ENST00000481019 PTP4A2Q12974 167 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 NR1H3Q13133 447 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 EIF4EBP2Q13542 120 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-213ENST00000481019 ANO4Q32M45 955 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 EMC10Q5UCC4 262 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 FYB2Q5VWT5 728 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 TOGARAM2Q6ZUX3 1019 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 DNAAF5Q86Y56 855 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 FAM217AQ8IXS0 508 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 PLD4Q96BZ4 506 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 SLC39A13Q96H72 371 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 KCNH6Q9H252 994 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 PDCL3Q9H2J4 239 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 POPDC2Q9HBU9 364 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 PRMT8Q9NR22 394 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-213ENST00000481019 MARK1Q9P0L2 795 aa12.74□□□□□ -0.37
PTPRF-213ENST00000481019 NCAM2O15394 837 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 TULP3O75386 442 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 LSM8O95777 96 aaKnown RBP12.73□□□□□ -0.37
PTPRF-213ENST00000481019 CISD3P0C7P0 127 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 UNGP13051 313 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-213ENST00000481019 TYRP14679 529 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 MSNP26038 577 aaKnown RBP12.73□□□□□ -0.37
PTPRF-213ENST00000481019 SLC6A4P31645 630 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 CASP14P31944 242 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 PTPN5P54829 565 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 TBX4P57082 545 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 CSTF1Q05048 431 aaKnown RBP12.73□□□□□ -0.37
PTPRF-213ENST00000481019 LRRC32Q14392 662 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 CLEC16AQ2KHT3 1053 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 RAB6CQ53S08 254 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 DCAF6Q58WW2 860 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 FAM133BQ5BKY9 247 aaKnown RBP12.73□□□□□ -0.37
PTPRF-213ENST00000481019 ZC3H12AQ5D1E8 599 aaKnown RBP12.73□□□□□ -0.37
PTPRF-213ENST00000481019 DGKKQ5KSL6 1271 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 RFWD3Q6PCD5 774 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 C1orf228Q6PIY5 440 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 MMS22LQ6ZRQ5 1243 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 BEND5Q7L4P6 421 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 ERICH1Q86X53 443 aa12.73□□□□□ -0.37
PTPRF-213ENST00000481019 ZNF677Q86XU0 584 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms