RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 GEMIN8Q9NWZ8 242 aaKnown RBP9.25□□□□□ -0.93
SYNE1-217ENST00000466159 CACNG4Q9UBN1 327 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 ZFP69BQ9UJL9 534 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 USP3Q9Y6I4 520 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 CEP350Q5VT06 3117 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 DCAF8L1A6NGE4 600 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 C2orf71A6NGG8 1288 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 HUS1O60921 280 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 RFPL1O75677 317 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 ATP5HO75947 161 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 KRT37O76014 449 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 ZFXP17010 805 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-217ENST00000466159 MATKP42679 507 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 ACADSBP45954 432 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 SERPINB4P48594 390 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 NDUFV1P49821 464 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 SULT1E1P49888 294 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 RABGGTBP53611 331 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 ADAM17P78536 824 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 PRKD1Q15139 912 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-217ENST00000466159 FAM110CQ1W6H9 321 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 ACCSLQ4AC99 568 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 DCAF6Q58WW2 860 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 CLNKQ7Z7G1 428 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 TLK2Q86UE8 772 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 CHSY1Q86X52 802 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 UNC5BQ8IZJ1 945 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 B3GALNT2Q8NCR0 500 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 HSFY1Q96LI6 401 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 ZNF560Q96MR9 790 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 EBNA1BP2Q99848 306 aaKnown RBP9.25□□□□□ -0.93
SYNE1-217ENST00000466159 MECRQ9BV79 373 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 TRIM55Q9BYV6 548 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 CEP41Q9BYV8 373 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 PIH1D1Q9NWS0 290 aaKnown RBP9.25□□□□□ -0.93
SYNE1-217ENST00000466159 FLRT1Q9NZU1 646 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 GTF2IRD1Q9UHL9 959 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 FZD10Q9ULW2 581 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 IPPQ9Y573 584 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 HMX2A2RU54 273 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 DGKIO75912 1065 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 EZRP15311 586 aaKnown RBP9.24□□□□□ -0.93
SYNE1-217ENST00000466159 KCNE1P15382 129 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 TPSB2P20231 275 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 AXLP30530 894 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 SCNN1AP37088 669 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 CRADDP78560 199 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 MRPS5P82675 430 aaKnown RBP9.24□□□□□ -0.93
SYNE1-217ENST00000466159 BEX3Q00994 111 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 TPSAB1Q15661 275 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 SLC25A52Q3SY17 297 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 XKR4Q5GH76 650 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 EFHC1Q5JVL4 640 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 ANKRD20A2Q5SQ80 823 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 MROH9Q5TGP6 573 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 ANKRD20A1Q5TYW2 823 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 ANKRD20A3Q5VUR7 823 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 OTUD1Q5VV17 481 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-217ENST00000466159 STRADAQ7RTN6 431 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 LIMS2Q7Z4I7 341 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 SMG8Q8ND04 991 aaKnown RBP9.24□□□□□ -0.93
SYNE1-217ENST00000466159 GSDMBQ8TAX9 411 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 TFB1MQ8WVM0 346 aaKnown RBP9.24□□□□□ -0.93
SYNE1-217ENST00000466159 HTR3CQ8WXA8 447 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 LRRC39Q96DD0 335 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 IQCGQ9H095 443 aaKnown RBP9.24□□□□□ -0.93
SYNE1-217ENST00000466159 KCNK13Q9HB14 408 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 ARHGEF4Q9NR80 690 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 CPA4Q9UI42 421 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 ZNF180Q9UJW8 692 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 CYB561D2O14569 222 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 XPO1O14980 1071 aaKnown RBP9.24□□□□□ -0.93
SYNE1-217ENST00000466159 MFSD11O43934 449 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 ARL4AP40617 200 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 PNPLA4P41247 253 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 PSEN2P49810 448 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 SEMA5AQ13591 1074 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 PCBP1Q15365 356 aaKnown RBP eCLIP9.24□□□□□ -0.93
SYNE1-217ENST00000466159 CTC1Q2NKJ3 1217 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 SV2CQ496J9 727 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 SYPL2Q5VXT5 272 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 C4orf22Q6V702 233 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 PAQR9Q6ZVX9 377 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 ARMC2Q8NEN0 867 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 ZNF398Q8TD17 642 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 PRR11Q96HE9 360 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-217ENST00000466159 OXNAD1Q96HP4 312 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-217ENST00000466159 TNIP3Q96KP6 325 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 ZFP42Q96MM3 310 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 OLFM3Q96PB7 478 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 RAB3IPQ96QF0 476 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-217ENST00000466159 PARK7Q99497 189 aaKnown RBP9.24□□□□□ -0.93
SYNE1-217ENST00000466159 TBC1D10AQ9BXI6 508 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 DUSP16Q9BY84 665 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 HEY2Q9UBP5 337 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 PLLPQ9Y342 182 aa9.24□□□□□ -0.93
SYNE1-217ENST00000466159 WDR27A2RRH5 827 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 FAM159BA6NKW6 160 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 XPOTO43592 962 aaKnown RBP9.23□□□□□ -0.93
SYNE1-217ENST00000466159 CREB3O43889 395 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms