RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 EPHB3P54753 998 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 CLDN10P78369 228 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 PCDH1Q08174 1060 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 BAATQ14032 418 aaPredicted RBP1.69□□□□□ -2.14
LINC00643-201ENST00000334389 FGL2Q14314 439 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 MORF4L2Q15014 288 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 PSMD5Q16401 504 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 NFE2Q16621 373 aaPredicted RBP1.69□□□□□ -2.14
LINC00643-201ENST00000334389 LRRC24Q50LG9 513 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 ANKS1BQ7Z6G8 1248 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 C12orf56Q8IXR9 622 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 CCDC13Q8IYE1 715 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 CMTM8Q8IZV2 173 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 DEFB124Q8NES8 71 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 KCNG4Q8TDN1 519 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 ADAMTS18Q8TE60 1221 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 TEKT4Q8WW24 435 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 IRGQQ8WZA9 623 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 TM9SF4Q92544 642 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 PPP1R14AQ96A00 147 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 FAF2Q96CS3 445 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 UIMC1Q96RL1 719 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 POLR3CQ9BUI4 534 aaPredicted RBP1.69□□□□□ -2.14
LINC00643-201ENST00000334389 ZCCHC2Q9C0B9 1178 aaKnown RBP1.69□□□□□ -2.14
LINC00643-201ENST00000334389 TTYH3Q9C0H2 523 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 INTS2Q9H0H0 1204 aaKnown RBP1.69□□□□□ -2.14
LINC00643-201ENST00000334389 BLZF1Q9H2G9 400 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 RMI1Q9H9A7 625 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 JPH1Q9HDC5 661 aaPredicted RBP1.69□□□□□ -2.14
LINC00643-201ENST00000334389 CNGB3Q9NQW8 809 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 IL1RAPL1Q9NZN1 696 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 VPS18Q9P253 973 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 CPNE7Q9UBL6 633 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 NOD1Q9Y239 953 aa1.69□□□□□ -2.14
LINC00643-201ENST00000334389 ARID1BQ8NFD5 2236 aaPredicted RBP1.69□□□□□ -2.14
LINC00643-201ENST00000334389 PRKDCP78527 4128 aaKnown RBP1.69□□□□□ -2.14
LINC00643-201ENST00000334389 SLC9B1P1A6NJY1 282 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ELL2O00472 640 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 BCAT2O15382 392 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 KLK8O60259 260 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 APPP05067 770 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 KRT19P08727 400 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 MYBL2P10244 700 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 P4HA1P13674 534 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CD99P14209 185 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CEBPBP17676 345 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 GABRG2P18507 467 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 SP100P23497 879 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 HOXA11P31270 313 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CHKAP35790 457 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 STAT5AP42229 794 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CA7P43166 264 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ST13P50502 369 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 PDX1P52945 283 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 BEX3Q00994 111 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 MBTD1Q05BQ5 628 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 SULT2A1Q06520 285 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 PTK2BQ14289 1009 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 NAA30Q147X3 362 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 GRM3Q14832 879 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 PPP2R5AQ15172 486 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 FUT11Q495W5 492 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CCDC81Q6ZN84 652 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 DSG4Q86SJ6 1040 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 TMEM150AQ86TG1 271 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 RETREG3Q86VR2 466 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CXorf67Q86X51 503 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ZSCAN29Q8IWY8 852 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 KYQ8NBH2 561 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 APOBEC4Q8WW27 367 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 SREK1Q8WXA9 508 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 TMEM87BQ96K49 555 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 FAM161BQ96MY7 647 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 MAP7D2Q96T17 732 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 NUP88Q99567 741 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 OCSTAMPQ9BR26 566 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ACBD6Q9BR61 282 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 MESP1Q9BRJ9 268 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 SDF4Q9BRK5 362 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 PAGR1Q9BTK6 254 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 SAP130Q9H0E3 1048 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 EPN3Q9H201 632 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 WDR54Q9H977 334 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 TM7SF3Q9NS93 570 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ADGRG1Q9Y653 693 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 FN1P02751 2386 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 DNAH9Q9NYC9 4486 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 CHD3Q12873 2000 aaKnown RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ANKRD36A6QL64 1941 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP1.68□□□□□ -2.14
LINC00643-201ENST00000334389 A0A1W2PQJ5 194 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 POM121CA8CG34 1229 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 PRAMEF26H0Y7S4 382 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 PSMD11O00231 422 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 P4HA2O15460 535 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 KIF4AO95239 1232 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 IL18RAPO95256 599 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 JCHAINP01591 159 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 ITGAVP06756 1048 aa1.68□□□□□ -2.14
LINC00643-201ENST00000334389 FGFR1P11362 822 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms