RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 GREB1LQ9C091 1923 aaPredicted RBP12□□□□□ -0.49
VPS4A-201ENST00000254950 ZSCAN5CA6NGD5 496 aaPredicted RBP12□□□□□ -0.49
VPS4A-201ENST00000254950 CSH1P0DML2 217 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 CSH2P0DML3 217 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 CA4P22748 312 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 FDFT1P37268 417 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 GLUD2P49448 558 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 DDR2Q16832 855 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 SLC25A52Q3SY17 297 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 CNKSR3Q6P9H4 555 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 MON1AQ86VX9 555 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 DDX1Q92499 740 aaKnown RBP12□□□□□ -0.49
VPS4A-201ENST00000254950 CALCOCO1Q9P1Z2 691 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 CDY1Q9Y6F8 540 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 LRCH4O75427 683 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 ADCY1Q08828 1119 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 KYNUQ16719 465 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 CFAP157Q5JU67 520 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 FAM43BQ6ZT52 329 aaPredicted RBP12□□□□□ -0.49
VPS4A-201ENST00000254950 NDUFAF2Q8N183 169 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 PDZD8Q8NEN9 1154 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 KLHDC9Q8NEP7 349 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 PDCD6IPQ8WUM4 868 aaKnown RBP12□□□□□ -0.49
VPS4A-201ENST00000254950 TBRG4Q969Z0 631 aaKnown RBP eCLIP12□□□□□ -0.49
VPS4A-201ENST00000254950 PHF24Q9UPV7 400 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12□□□□□ -0.49
VPS4A-201ENST00000254950 PAPSS1O43252 624 aaPredicted RBP12□□□□□ -0.49
VPS4A-201ENST00000254950 CFHP08603 1231 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 NFKBIAP25963 317 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 IFNAR2P48551 515 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 IL9RQ01113 521 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 ZNF177Q13360 481 aaPredicted RBP12□□□□□ -0.49
VPS4A-201ENST00000254950 FAXCQ5TGI0 409 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 SDHAF4Q5VUM1 108 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 LRIG3Q6UXM1 1119 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 B4GALNT4Q76KP1 1039 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 RASGEF1CQ8N431 466 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 RNF157Q96PX1 679 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 MUC3BQ9H195 1237 aa12□□□□□ -0.49
VPS4A-201ENST00000254950 XAB2Q9HCS7 855 aaKnown RBP12□□□□□ -0.49
VPS4A-201ENST00000254950 hCG_1818297A0A087WSY0 165 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 ABHD14A-ACY1A0A1B0GW23 586 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 NRP1O14786 923 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 CTNNB1P35222 781 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 PTP4A2Q12974 167 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 MORF4L2Q15014 288 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 TTC30AQ86WT1 665 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 LZTR1Q8N653 840 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 MCRS1Q96EZ8 462 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 CYTH2Q99418 400 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 ZNF670Q9BS34 389 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 RGS18Q9NS28 235 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 ZC3H7BQ9UGR2 993 aaKnown RBP11.99□□□□□ -0.49
VPS4A-201ENST00000254950 KIF13BQ9NQT8 1826 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 PITPNM1O00562 1244 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 ATP9BO43861 1147 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 ZNF132P52740 706 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 RAD51Q06609 339 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 DUSP4Q13115 394 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 SETDB1Q15047 1291 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 PABPC1LQ4VXU2 614 aaKnown RBP11.99□□□□□ -0.49
VPS4A-201ENST00000254950 ZC3H12AQ5D1E8 599 aaKnown RBP11.99□□□□□ -0.49
VPS4A-201ENST00000254950 RAPH1Q70E73 1250 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 CCDC33Q8N5R6 958 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 LRRC19Q9H756 370 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.99□□□□□ -0.49
VPS4A-201ENST00000254950 RASA4BC9J798 803 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 RASA4O43374 803 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 TLL1O43897 1013 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 TKTP29401 623 aaKnown RBP11.99□□□□□ -0.49
VPS4A-201ENST00000254950 PTPN9P43378 593 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 SOX4Q06945 474 aaPredicted RBP11.99□□□□□ -0.49
VPS4A-201ENST00000254950 UBXN11Q5T124 520 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 NUGGCQ68CJ6 796 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 CCDC121Q6ZUS5 278 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 CCDC149Q6ZUS6 474 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 LINC01465Q8N7H1 131 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 TEKT4Q8WW24 435 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 TTC1Q99614 292 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 PCYOX1Q9UHG3 505 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 TLK1Q9UKI8 766 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 CHMP2BQ9UQN3 213 aa11.99□□□□□ -0.49
VPS4A-201ENST00000254950 FNDC3AQ9Y2H6 1198 aaKnown RBP11.99□□□□□ -0.49
VPS4A-201ENST00000254950 PSME4Q14997 1843 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 GOLGA8CPA6NN73 597 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 ENPP3O14638 875 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 SPAG6O75602 509 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 MYL4P12829 197 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 ATP5C1P36542 298 aaKnown RBP11.98□□□□□ -0.49
VPS4A-201ENST00000254950 TUBP50607 506 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 MAGOHP61326 146 aaKnown RBP11.98□□□□□ -0.49
VPS4A-201ENST00000254950 TIGD7Q6NT04 549 aaPredicted RBP11.98□□□□□ -0.49
VPS4A-201ENST00000254950 IRGQQ8WZA9 623 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 FUBP3Q96I24 572 aaKnown RBP eCLIP11.98□□□□□ -0.49
VPS4A-201ENST00000254950 ATP6V1G3Q96LB4 118 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 SLC4A5Q9BY07 1137 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 PABPC3Q9H361 631 aaKnown RBP11.98□□□□□ -0.49
VPS4A-201ENST00000254950 OR12D3Q9UGF7 316 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 EFR3BQ9Y2G0 817 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 C2CD4BA6NLJ0 364 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms