RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 HMGB4Q8WW32 186 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 CNTNAP3BQ96NU0 1288 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 GSDMAQ96QA5 445 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 TSG101Q99816 390 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 NUSAP1Q9BXS6 441 aaKnown RBP12.55□□□□□ -0.4
UPF3B-204ENST00000619445 CNTNAP3Q9BZ76 1288 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 DNAJC17Q9NVM6 304 aaKnown RBP12.55□□□□□ -0.4
UPF3B-204ENST00000619445 HMGXB4Q9UGU5 601 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 NAGPAQ9UK23 515 aa12.55□□□□□ -0.4
UPF3B-204ENST00000619445 KMT2BQ9UMN6 2715 aaPredicted RBP12.54□□□□□ -0.4
UPF3B-204ENST00000619445 TCRBV21S2A2A0A5A6 115 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 LNP1A1A4G5 178 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 GOLGA6L4A6NEF3 574 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 HHLA1C9JL84 531 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 NEDD8-MDP1E9PL57 170 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 SLC16A3O15427 465 aaKnown RBP12.54□□□□□ -0.4
UPF3B-204ENST00000619445 CYP26A1O43174 497 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 ADAM23O75077 832 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 KCNK5O95279 499 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 SMC2O95347 1197 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 CHRM1P11229 460 aaPredicted RBP12.54□□□□□ -0.4
UPF3B-204ENST00000619445 HOXB2P14652 356 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 TYRP14679 529 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 CD58P19256 250 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 ORC1Q13415 861 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 COBLL1Q53SF7 1204 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 NAT16Q8N8M0 369 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 HEXIM2Q96MH2 286 aaKnown RBP12.54□□□□□ -0.4
UPF3B-204ENST00000619445 APOBEC3GQ9HC16 384 aaKnown RBP12.54□□□□□ -0.4
UPF3B-204ENST00000619445 RAB20Q9NX57 234 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 STRIP2Q9ULQ0 834 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 CIZ1Q9ULV3 898 aaPredicted RBP12.54□□□□□ -0.4
UPF3B-204ENST00000619445 MAPK8IP1Q9UQF2 711 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 ZDHHC9Q9Y397 364 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 USP3Q9Y6I4 520 aa12.54□□□□□ -0.4
UPF3B-204ENST00000619445 A0A1W2PQH9 124 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 GREM1O60565 184 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 TBX18O95935 607 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 PRR29P0C7W0 189 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 CSRP1P21291 193 aaKnown RBP12.53□□□□□ -0.4
UPF3B-204ENST00000619445 PMLP29590 882 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 PPP1R2P41236 205 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 DGKGP49619 791 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 FKBP3Q00688 224 aaKnown RBP12.53□□□□□ -0.4
UPF3B-204ENST00000619445 MAP7D1Q3KQU3 841 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 LYSMD4Q5XG99 296 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 ARHGAP17Q68EM7 881 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 Q6ZNB5 142 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 CHPFQ8IZ52 775 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 UCMAQ8WVF2 138 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 PIGKQ92643 395 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 JAKMIP2Q96AA8 810 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 TMEM176AQ96HP8 235 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 CHAMP1Q96JM3 812 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 TWNKQ96RR1 684 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 MMRN2Q9H8L6 949 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 RXFP3Q9NSD7 469 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 CISHQ9NSE2 258 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 OLA1Q9NTK5 396 aaKnown RBP12.53□□□□□ -0.4
UPF3B-204ENST00000619445 INVSQ9Y283 1065 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 SLC27A6Q9Y2P4 619 aa12.53□□□□□ -0.4
UPF3B-204ENST00000619445 ASCC3Q8N3C0 2202 aaKnown RBP12.52□□□□□ -0.4
UPF3B-204ENST00000619445 CEP192Q8TEP8 1941 aa12.52□□□□□ -0.4
UPF3B-204ENST00000619445 LAMA1P25391 3075 aa12.52□□□□□ -0.4
UPF3B-204ENST00000619445 CACNA1EQ15878 2313 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 C4orf47A7E2U8 309 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 CYBBP04839 570 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 CEACAM1P13688 526 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 HNRNPLP14866 589 aaKnown RBP eCLIP12.52□□□□□ -0.414e-7■■■■□ 24
UPF3B-204ENST00000619445 BCKDHBP21953 392 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 ZNF445P59923 1031 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 LRRC63Q05C16 580 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 MESP2Q0VG99 397 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 STIM1Q13586 685 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 STARD3Q14849 445 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 TRIM61Q5EBN2 209 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 PPP1R26Q5T8A7 1209 aaPredicted RBP12.52□□□□□ -0.41
UPF3B-204ENST00000619445 N4BP2L1Q5TBK1 243 aaPredicted RBP12.52□□□□□ -0.41
UPF3B-204ENST00000619445 EMC10Q5UCC4 262 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 TCEAL6Q6IPX3 200 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 TPGS1Q6ZTW0 290 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 RSRC2Q7L4I2 434 aaKnown RBP12.52□□□□□ -0.41
UPF3B-204ENST00000619445 GPRIN1Q7Z2K8 1008 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 ANKRD52Q8NB46 1076 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 TCEAL3Q969E4 200 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 ELMO3Q96BJ8 720 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 GABRG3Q99928 467 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 SMOC1Q9H4F8 434 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 HESX1Q9UBX0 185 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 KIAA1257Q9ULG3 409 aa12.52□□□□□ -0.41
UPF3B-204ENST00000619445 TNRC6BQ9UPQ9 1833 aaKnown RBP12.52□□□□□ -0.41
UPF3B-204ENST00000619445 PCNX2A6NKB5 2137 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 STC2O76061 302 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 TBXAS1P24557 533 aaPredicted RBP12.51□□□□□ -0.41
UPF3B-204ENST00000619445 NOVA1P51513 510 aaKnown RBP12.51□□□□□ -0.41
UPF3B-204ENST00000619445 BCAT1P54687 386 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 RPL6Q02878 288 aaKnown RBP12.51□□□□□ -0.41
UPF3B-204ENST00000619445 BECN1Q14457 450 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 EIF4HQ15056 248 aaKnown RBP12.51□□□□□ -0.41
UPF3B-204ENST00000619445 DUOXA1Q1HG43 343 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms