RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 GMCL1Q96IK5 515 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 BTBD7Q9P203 1132 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 FETUBQ9UGM5 382 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 GOLGA8QA0A0J9YX86 632 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 GOLGA8OA6NCC3 632 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 GOLGA8NF8WBI6 632 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 ZBTB14O43829 449 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 LRCH4O75427 683 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 TRMUO75648 421 aaKnown RBP12.12□□□□□ -0.47
CPSF3-202ENST00000460593 APRTP07741 180 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 SETSIPP0DME0 302 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 CRADDP78560 199 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 C1QBPQ07021 282 aaKnown RBP12.12□□□□□ -0.47
CPSF3-202ENST00000460593 NRF1Q16656 503 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 FAM98CQ17RN3 349 aaKnown RBP12.12□□□□□ -0.47
CPSF3-202ENST00000460593 GPAT2Q6NUI2 795 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 TMEM179Q6ZVK1 233 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 KCTD6Q8NC69 237 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 FAM156AQ8NDB6 213 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 MIPOL1Q8TD10 442 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 C1orf21Q9H246 121 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 TUT1Q9H6E5 874 aaKnown RBP12.12□□□□□ -0.47
CPSF3-202ENST00000460593 TBC1D22BQ9NU19 505 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 ZNF358Q9NW07 568 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 PI4KBQ9UBF8 816 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 EXOC7Q9UPT5 735 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 GNEQ9Y223 722 aaKnown RBP12.12□□□□□ -0.47
CPSF3-202ENST00000460593 STX16-NPEPL1H3BU86 382 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 PDGFRBP09619 1106 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 KDELR1P24390 212 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 SERPINB5P36952 375 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 IDH3AP50213 366 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 DCTN2Q13561 401 aaKnown RBP12.12□□□□□ -0.47
CPSF3-202ENST00000460593 TEDDM1Q5T9Z0 273 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 ANO5Q75V66 913 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 TAS1R3Q7RTX0 852 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 ZNF677Q86XU0 584 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 CPXCR1Q8N123 301 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 PQLC1Q8N2U9 271 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 WDTC1Q8N5D0 677 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 HAPLN2Q9GZV7 340 aa12.12□□□□□ -0.47
CPSF3-202ENST00000460593 CCNL1Q9UK58 526 aaPredicted RBP12.12□□□□□ -0.47
CPSF3-202ENST00000460593 RBBP6Q7Z6E9 1792 aaKnown RBP12.11□□□□□ -0.47
CPSF3-202ENST00000460593 SPDYE2BA6NHP3 402 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 G3V3G9 751 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 H7C0C1 242 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 CST3P01034 146 aaPredicted RBP12.11□□□□□ -0.47
CPSF3-202ENST00000460593 C4BPAP04003 597 aaKnown RBP12.11□□□□□ -0.47
CPSF3-202ENST00000460593 SPDYE6P0CI01 402 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 PIM1P11309 404 aaPredicted RBP12.11□□□□□ -0.47
CPSF3-202ENST00000460593 FGFR3P22607 806 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 ATP5OP48047 213 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 SLC1A6P48664 564 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 MPP3Q13368 585 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 ZACNQ401N2 412 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 SPDYE2Q495Y8 402 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 PPM1JQ5JR12 505 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 DCAF8Q5TAQ9 597 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 OGFRL1Q5TC84 451 aaPredicted RBP12.11□□□□□ -0.47
CPSF3-202ENST00000460593 MAP3K21Q5TCX8 1036 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 ZNF554Q86TJ5 538 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 KBTBD6Q86V97 674 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 WDR75Q8IWA0 830 aaKnown RBP12.11□□□□□ -0.47
CPSF3-202ENST00000460593 LILRA2Q8N149 483 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 FBXW8Q8N3Y1 598 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 PIWIL2Q8TC59 973 aaKnown RBP12.11□□□□□ -0.47
CPSF3-202ENST00000460593 TFAP2BQ92481 460 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 SEMA6AQ9H2E6 1030 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 GMEB1Q9Y692 573 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 CNTNAP4Q9C0A0 1308 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 CCNE2O96020 404 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 GSRP00390 522 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 AMHP03971 560 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 ENTPD1P49961 510 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 CDH15P55291 814 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 ITGA9Q13797 1035 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 KRT81Q14533 505 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 AOC3Q16853 763 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 LDHDQ86WU2 507 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 HACE1Q8IYU2 909 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 GMCL1P1Q8NEA9 526 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 ACTRT2Q8TDY3 377 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 GLIS2Q9BZE0 524 aaPredicted RBP12.11□□□□□ -0.47
CPSF3-202ENST00000460593 TDRD3Q9H7E2 651 aaKnown RBP12.11□□□□□ -0.47
CPSF3-202ENST00000460593 ANLNQ9NQW6 1124 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 INIPQ9NRY2 104 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 TCEAL9Q9UHQ7 104 aa12.11□□□□□ -0.47
CPSF3-202ENST00000460593 MAPTP10636 758 aaKnown RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 XRCC1P18887 633 aaPredicted RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 SERPINB8P50452 374 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 SLC25A11Q02978 314 aaKnown RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 WASHC5Q12768 1159 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 N4BP2L1Q5TBK1 243 aaPredicted RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 ANGEL2Q5VTE6 544 aaKnown RBP12.1□□□□□ -0.47
CPSF3-202ENST00000460593 UNC5AQ6ZN44 842 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 C15orf39Q6ZRI6 1047 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 ENOSF1Q7L5Y1 443 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 ZNF410Q86VK4 478 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 C10orf107Q8IVU9 208 aa12.1□□□□□ -0.47
CPSF3-202ENST00000460593 RTKN2Q8IZC4 609 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms