RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 PCDHA6Q9UN73 950 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 DCAF1Q9Y4B6 1507 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.55□□□□□ -2
HMGB3P17-201ENST00000504195 CES2O00748 559 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 FGAP02671 866 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 PTMAP06454 111 aaKnown RBP2.54□□□□□ -2
HMGB3P17-201ENST00000504195 CSF1RP07333 972 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 ADORA2AP29274 412 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 DGKEP52429 567 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 UCP3P55916 312 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 NKX6-1P78426 367 aaPredicted RBP2.54□□□□□ -2
HMGB3P17-201ENST00000504195 RPL36AP83881 106 aaKnown RBP2.54□□□□□ -2
HMGB3P17-201ENST00000504195 AMPD3Q01432 767 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 TROAPQ12815 778 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 MLC1Q15049 377 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 CYP1B1Q16678 543 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 RNASE12Q5GAN4 147 aaKnown RBP2.54□□□□□ -2
HMGB3P17-201ENST00000504195 DENND2CQ68D51 928 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 CATIPQ7Z7H3 387 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 RAB11FIP4Q86YS3 637 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 LIX1LQ8IVB5 337 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 IQCF1Q8N6M8 205 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 PRPF38AQ8NAV1 312 aaKnown RBP2.54□□□□□ -2
HMGB3P17-201ENST00000504195 ATP2A3Q93084 1043 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 MVB12AQ96EY5 273 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 PRR25Q96S07 402 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 SMAD5Q99717 465 aaKnown RBP2.54□□□□□ -2
HMGB3P17-201ENST00000504195 MESP1Q9BRJ9 268 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 TMEM8AQ9HCN3 771 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 ZBTB40Q9NUA8 1239 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 ZSCAN32Q9NX65 697 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 DNMT3BQ9UBC3 853 aaKnown RBP2.54□□□□□ -2
HMGB3P17-201ENST00000504195 CPA4Q9UI42 421 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 MED16Q9Y2X0 877 aa2.54□□□□□ -2
HMGB3P17-201ENST00000504195 SOCS5O75159 536 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 VNN1O95497 513 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 SYF2O95926 243 aaKnown RBP2.53□□□□□ -2
HMGB3P17-201ENST00000504195 MT-CO3P00414 261 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 CYP19A1P11511 503 aaPredicted RBP2.53□□□□□ -2
HMGB3P17-201ENST00000504195 VCAM1P19320 739 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 KCNA3P22001 575 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 TNFRSF8P28908 595 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 GKP32189 559 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 SLC11A2P49281 568 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 TAF6P49848 677 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 COPB1P53618 953 aaKnown RBP2.53□□□□□ -2
HMGB3P17-201ENST00000504195 HSF1Q00613 529 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 CFHR1Q03591 330 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 NFATC4Q14934 902 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 LY6KQ17RY6 165 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 TMEM240Q5SV17 173 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 CERCAMQ5T4B2 595 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 LMBRD2Q68DH5 695 aaPredicted RBP2.53□□□□□ -2
HMGB3P17-201ENST00000504195 TMEM65Q6PI78 240 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 DPY19L3Q6ZPD9 716 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 ZNF280BQ86YH2 543 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 C16orf71Q8IYS4 520 aaPredicted RBP2.53□□□□□ -2
HMGB3P17-201ENST00000504195 SPARTQ8N0X7 666 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 HSPBAP1Q96EW2 488 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 MAP3K14Q99558 947 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 C17orf80Q9BSJ5 609 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 GTPBP4Q9BZE4 634 aaKnown RBP2.53□□□□□ -2
HMGB3P17-201ENST00000504195 ARHGAP39Q9C0H5 1083 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 SEMA4BQ9NPR2 832 aaPredicted RBP2.53□□□□□ -2
HMGB3P17-201ENST00000504195 SNX15Q9NRS6 342 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 PIH1D1Q9NWS0 290 aaKnown RBP2.53□□□□□ -2
HMGB3P17-201ENST00000504195 ASIC5Q9NY37 505 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 ICAM5Q9UMF0 924 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 STXBP5LQ9Y2K9 1186 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 SNX14Q9Y5W7 946 aa2.53□□□□□ -2
HMGB3P17-201ENST00000504195 SBNO2Q9Y2G9 1366 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 WASHC2CQ9Y4E1 1318 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 A0A087WYN8 130 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 M0R3H8 397 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 SPTLC2O15270 562 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 RHCEP18577 417 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 AKAP5P24588 427 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 PRKAR1BP31321 381 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 PSG6Q00889 435 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 MTX1Q13505 466 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 CCNIQ14094 377 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 LARS2Q15031 903 aaKnown RBP2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 ZNF750Q32MQ0 723 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 MANEAQ5SRI9 462 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 GAS2L3Q86XJ1 694 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 SLC15A4Q8N697 577 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 DNAJC5GQ8N7S2 189 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 BPIFB1Q8TDL5 484 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 IPO4Q8TEX9 1081 aaKnown RBP2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 PNISRQ8TF01 805 aaKnown RBP2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 PPP2R3CQ969Q6 453 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 HS6ST2Q96MM7 605 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 ASPSCR1Q9BZE9 553 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 ARMT1Q9H993 441 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 GBA2Q9HCG7 927 aaPredicted RBP2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 CD93Q9NPY3 652 aa2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 LUC7L2Q9Y383 392 aaKnown RBP2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 ZSCAN21Q9Y5A6 473 aaPredicted RBP2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 TRIP12Q14669 1992 aaPredicted RBP2.52□□□□□ -2.01
HMGB3P17-201ENST00000504195 CADPSQ9ULU8 1353 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms