RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ADAMTS8Q9UP79 889 aa15□□□□□ -0.01
VPS4A-201ENST00000254950 A0A0G2JS52 829 aa14.99□□□□□ -0.01
VPS4A-201ENST00000254950 MS4A1P11836 297 aa14.99□□□□□ -0.01
VPS4A-201ENST00000254950 UGGT1Q9NYU2 1555 aa14.98□□□□□ -0.01
VPS4A-201ENST00000254950 RUNDC1Q96C34 613 aa14.98□□□□□ -0.01
VPS4A-201ENST00000254950 NINLQ9Y2I6 1382 aa14.98□□□□□ -0.01
VPS4A-201ENST00000254950 PUS7Q96PZ0 661 aaKnown RBP14.98□□□□□ -0.01
VPS4A-201ENST00000254950 DIP2BQ9P265 1576 aa14.98□□□□□ -0.01
VPS4A-201ENST00000254950 YTHDC2Q9H6S0 1430 aaKnown RBP14.97□□□□□ -0.01
VPS4A-201ENST00000254950 ABTB2Q8N961 1025 aa14.97□□□□□ -0.01
VPS4A-201ENST00000254950 TBX22Q9Y458 520 aa14.97□□□□□ -0.01
VPS4A-201ENST00000254950 ERVK-7P63135 1459 aa14.96□□□□□ -0.01
VPS4A-201ENST00000254950 TMEM2Q9UHN6 1383 aa14.96□□□□□ -0.01
VPS4A-201ENST00000254950 NUTM2GQ5VZR2 741 aa14.95□□□□□ -0.02
VPS4A-201ENST00000254950 LRPPRCP42704 1394 aaKnown RBP14.95□□□□□ -0.02
VPS4A-201ENST00000254950 KDM5CP41229 1560 aa14.95□□□□□ -0.02
VPS4A-201ENST00000254950 DIP2CQ9Y2E4 1556 aa14.95□□□□□ -0.02
VPS4A-201ENST00000254950 E9PSI1 815 aa14.94□□□□□ -0.02
VPS4A-201ENST00000254950 ERICH6BQ5W0A0 696 aa14.94□□□□□ -0.02
VPS4A-201ENST00000254950 COL17A1Q9UMD9 1497 aaPredicted RBP14.94□□□□□ -0.02
VPS4A-201ENST00000254950 NPM2Q86SE8 214 aaKnown RBP14.94□□□□□ -0.02
VPS4A-201ENST00000254950 MYOM2P54296 1465 aa14.94□□□□□ -0.02
VPS4A-201ENST00000254950 KIDINS220Q9ULH0 1771 aa14.93□□□□□ -0.02
VPS4A-201ENST00000254950 LMTK2Q8IWU2 1503 aa14.92□□□□□ -0.02
VPS4A-201ENST00000254950 CHMP4BQ9H444 224 aaKnown RBP14.91□□□□□ -0.02
VPS4A-201ENST00000254950 NSD2O96028 1365 aa14.91□□□□□ -0.02
VPS4A-201ENST00000254950 AMER1Q5JTC6 1135 aaPredicted RBP14.9□□□□□ -0.02
VPS4A-201ENST00000254950 KIF1BO60333 1816 aa14.9□□□□□ -0.02
VPS4A-201ENST00000254950 ANKRD36BQ8N2N9 1353 aa14.9□□□□□ -0.02
VPS4A-201ENST00000254950 IPO8O15397 1037 aaKnown RBP14.9□□□□□ -0.02
VPS4A-201ENST00000254950 HMOX1P09601 288 aa14.9□□□□□ -0.02
VPS4A-201ENST00000254950 RIPK4P57078 832 aa14.9□□□□□ -0.02
VPS4A-201ENST00000254950 TCP11L2Q8N4U5 519 aa14.9□□□□□ -0.02
VPS4A-201ENST00000254950 RBM33Q96EV2 1170 aaKnown RBP14.9□□□□□ -0.02
VPS4A-201ENST00000254950 PHF8Q9UPP1 1060 aa14.9□□□□□ -0.02
VPS4A-201ENST00000254950 ABCA6Q8N139 1617 aa14.89□□□□□ -0.03
VPS4A-201ENST00000254950 RNF17Q9BXT8 1623 aaKnown RBP14.89□□□□□ -0.03
VPS4A-201ENST00000254950 B4GALNT3Q6L9W6 998 aa14.89□□□□□ -0.03
VPS4A-201ENST00000254950 CLTCL1P53675 1640 aa14.89□□□□□ -0.03
VPS4A-201ENST00000254950 AEBP2Q6ZN18 517 aaPredicted RBP14.89□□□□□ -0.03
VPS4A-201ENST00000254950 LTKP29376 864 aa14.88□□□□□ -0.03
VPS4A-201ENST00000254950 NME9Q86XW9 330 aa14.88□□□□□ -0.03
VPS4A-201ENST00000254950 SPHKAPQ2M3C7 1700 aa14.87□□□□□ -0.03
VPS4A-201ENST00000254950 ABCC11Q96J66 1382 aa14.87□□□□□ -0.03
VPS4A-201ENST00000254950 SMC4Q9NTJ3 1288 aa14.87□□□□□ -0.03
VPS4A-201ENST00000254950 ASXL1Q8IXJ9 1541 aa14.87□□□□□ -0.03
VPS4A-201ENST00000254950 SBNO2Q9Y2G9 1366 aa14.87□□□□□ -0.03
VPS4A-201ENST00000254950 E9PCH4 1651 aa14.86□□□□□ -0.03
VPS4A-201ENST00000254950 AGLP35573 1532 aa14.86□□□□□ -0.03
VPS4A-201ENST00000254950 PER1O15534 1290 aaPredicted RBP14.86□□□□□ -0.03
VPS4A-201ENST00000254950 CHMP4AQ9BY43 222 aa14.86□□□□□ -0.03
VPS4A-201ENST00000254950 KCNA6P17658 529 aa14.86□□□□□ -0.03
VPS4A-201ENST00000254950 NLRP1Q9C000 1473 aa14.86□□□□□ -0.03
VPS4A-201ENST00000254950 PIK3C2GO75747 1445 aa14.86□□□□□ -0.03
VPS4A-201ENST00000254950 PRKAR2BP31323 418 aa14.85□□□□□ -0.03
VPS4A-201ENST00000254950 ACEP12821 1306 aa14.85□□□□□ -0.03
VPS4A-201ENST00000254950 RRS1Q15050 365 aaKnown RBP14.85□□□□□ -0.03
VPS4A-201ENST00000254950 PARD3Q8TEW0 1356 aa14.85□□□□□ -0.03
VPS4A-201ENST00000254950 CEP152O94986 1710 aa14.85□□□□□ -0.03
VPS4A-201ENST00000254950 MYT1Q01538 1121 aa14.84□□□□□ -0.03
VPS4A-201ENST00000254950 NCKAP5LQ9HCH0 1330 aa14.84□□□□□ -0.03
VPS4A-201ENST00000254950 DMRT2Q9Y5R5 561 aa14.84□□□□□ -0.03
VPS4A-201ENST00000254950 HSPA2P54652 639 aa14.84□□□□□ -0.03
VPS4A-201ENST00000254950 PPIP5K1Q6PFW1 1433 aa14.83□□□□□ -0.03
VPS4A-201ENST00000254950 MAP3K4Q9Y6R4 1608 aa14.83□□□□□ -0.04
VPS4A-201ENST00000254950 SIRT1Q96EB6 747 aa14.83□□□□□ -0.04
VPS4A-201ENST00000254950 CARD14Q9BXL6 1004 aa14.83□□□□□ -0.04
VPS4A-201ENST00000254950 ZFYVE9O95405 1425 aa14.83□□□□□ -0.04
VPS4A-201ENST00000254950 ANP32AP39687 249 aaKnown RBP14.83□□□□□ -0.04
VPS4A-201ENST00000254950 FYB1O15117 783 aa14.82□□□□□ -0.04
VPS4A-201ENST00000254950 FOXO3O43524 673 aa14.82□□□□□ -0.04
VPS4A-201ENST00000254950 C1orf141Q5JVX7 400 aa14.82□□□□□ -0.04
VPS4A-201ENST00000254950 PPRC1Q5VV67 1664 aaKnown RBP14.82□□□□□ -0.04
VPS4A-201ENST00000254950 XPCQ01831 940 aaPredicted RBP14.82□□□□□ -0.04
VPS4A-201ENST00000254950 EVA1CP58658 441 aa14.82□□□□□ -0.04
VPS4A-201ENST00000254950 ZMYM4Q5VZL5 1548 aa14.82□□□□□ -0.04
VPS4A-201ENST00000254950 STK31Q9BXU1 1019 aa14.82□□□□□ -0.04
VPS4A-201ENST00000254950 ARHGEF40Q8TER5 1519 aa14.81□□□□□ -0.04
VPS4A-201ENST00000254950 PLEKHG1Q9ULL1 1385 aa14.81□□□□□ -0.04
VPS4A-201ENST00000254950 RRP1P56182 461 aaKnown RBP14.81□□□□□ -0.04
VPS4A-201ENST00000254950 CADPS2Q86UW7 1296 aa14.81□□□□□ -0.04
VPS4A-201ENST00000254950 CDCA7LQ96GN5 454 aa14.81□□□□□ -0.04
VPS4A-201ENST00000254950 SULT6B1Q6IMI4 303 aa14.81□□□□□ -0.04
VPS4A-201ENST00000254950 UPF2Q9HAU5 1272 aaKnown RBP14.81□□□□□ -0.04
VPS4A-201ENST00000254950 KCNH5Q8NCM2 988 aa14.8□□□□□ -0.04
VPS4A-201ENST00000254950 FCHSD2O94868 740 aa14.8□□□□□ -0.04
VPS4A-201ENST00000254950 TEFQ10587 303 aa14.8□□□□□ -0.04
VPS4A-201ENST00000254950 A2ML1A8K2U0 1454 aa14.8□□□□□ -0.04
VPS4A-201ENST00000254950 CAMSAP1Q5T5Y3 1602 aa14.8□□□□□ -0.04
VPS4A-201ENST00000254950 GNAI1P63096 354 aa14.8□□□□□ -0.04
VPS4A-201ENST00000254950 ARXQ96QS3 562 aa14.8□□□□□ -0.04
VPS4A-201ENST00000254950 NLRP2Q9NX02 1062 aa14.8□□□□□ -0.04
VPS4A-201ENST00000254950 RAPGEF4Q8WZA2 1011 aa14.79□□□□□ -0.04
VPS4A-201ENST00000254950 CCDC9Q9Y3X0 531 aaKnown RBP14.79□□□□□ -0.04
VPS4A-201ENST00000254950 A0A1W2PP64 1363 aa14.79□□□□□ -0.04
VPS4A-201ENST00000254950 TTC21BQ7Z4L5 1316 aa14.79□□□□□ -0.04
VPS4A-201ENST00000254950 NPC1L1Q9UHC9 1359 aa14.79□□□□□ -0.04
VPS4A-201ENST00000254950 ELL2O00472 640 aaPredicted RBP14.79□□□□□ -0.04
VPS4A-201ENST00000254950 EMILIN1Q9Y6C2 1016 aa14.79□□□□□ -0.04
VPS4A-201ENST00000254950 ADGRB3O60242 1522 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms