RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 CPA5Q8WXQ8 436 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 PPM1EQ8WY54 764 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 IRGQQ8WZA9 623 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 PSMG2Q969U7 264 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 TRIM11Q96F44 468 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 ZNF830Q96NB3 372 aaPredicted RBP11.11□□□□□ -0.63
VPS33A-204ENST00000540669 C11orf70Q9BRQ4 267 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 DESI2Q9BSY9 194 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 LACRTQ9GZZ8 138 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 NSUN3Q9H649 340 aaKnown RBP11.11□□□□□ -0.63
VPS33A-204ENST00000540669 IL21Q9HBE4 155 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 CNGB3Q9NQW8 809 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 ASNSD1Q9NWL6 643 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 ZDHHC7Q9NXF8 308 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 TMEM59LQ9UK28 342 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 CEP83Q9Y592 693 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 NCK2O43639 380 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 SOAT2O75908 522 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 FTLP02792 175 aaPredicted RBP11.1□□□□□ -0.63
VPS33A-204ENST00000540669 CALB1P05937 261 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 FYNP06241 537 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 PTMAP06454 111 aaKnown RBP11.1□□□□□ -0.63
VPS33A-204ENST00000540669 C8AP07357 584 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 GLI1P08151 1106 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 HNRNPA1P09651 372 aaKnown RBP eCLIP11.1□□□□□ -0.63
VPS33A-204ENST00000540669 RRM1P23921 792 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 CA8P35219 290 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 ZNF252P-AS1Q0IIN9 211 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 ADIGQ0VDE8 80 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 PLD1Q13393 1074 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 EIF4EBP2Q13542 120 aaPredicted RBP11.1□□□□□ -0.63
VPS33A-204ENST00000540669 ZNF268Q14587 947 aaPredicted RBP11.1□□□□□ -0.63
VPS33A-204ENST00000540669 DDR2Q16832 855 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 CCDC122Q5T0U0 273 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 OTUD1Q5VV17 481 aaPredicted RBP11.1□□□□□ -0.63
VPS33A-204ENST00000540669 LLGL2Q6P1M3 1020 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 DENND5BQ6ZUT9 1274 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 FAM183BPQ6ZVS7 135 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 TMEM150AQ86TG1 271 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 REXO1L1PQ8IX06 675 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 EFHBQ8N7U6 833 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 SLC7A14Q8TBB6 771 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 KIAA1524Q8TCG1 905 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 MICAL1Q8TDZ2 1067 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 RFFLQ8WZ73 363 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 NT5C3BQ969T7 300 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 C18orf8Q96DM3 657 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 NOX5Q96PH1 765 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 SLC2A13Q96QE2 648 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 MED10Q9BTT4 135 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 THAP2Q9H0W7 228 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 DEF6Q9H4E7 631 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 MAN1C1Q9NR34 630 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 ADAM22Q9P0K1 906 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 WDR35Q9P2L0 1181 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 SALL4Q9UJQ4 1053 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 STRIP2Q9ULQ0 834 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 SCML2Q9UQR0 700 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 ZKSCAN5Q9Y2L8 839 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 PPP2R2CQ9Y2T4 447 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 ASB3Q9Y575 518 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 PCDHA13Q9Y5I0 950 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 C5orf42Q9H799 3197 aa11.1□□□□□ -0.63
VPS33A-204ENST00000540669 SLC38A8A6NNN8 435 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 NRG2O14511 850 aaPredicted RBP11.09□□□□□ -0.63
VPS33A-204ENST00000540669 FBXO21O94952 628 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 RTN3O95197 1032 aaPredicted RBP11.09□□□□□ -0.63
VPS33A-204ENST00000540669 OLFM2O95897 454 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 IGLV3-25P01717 112 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 H2AFZP0C0S5 128 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 NRIP1P48552 1158 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 PGFP49763 221 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 RGS7P49802 495 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 TKTL1P51854 596 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 ARPP19P56211 112 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 KRT83P78385 493 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 RBM10P98175 930 aaKnown RBP11.09□□□□□ -0.63
VPS33A-204ENST00000540669 MAMLD1Q13495 774 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 C2CD6Q53TS8 623 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 TCEAL5Q5H9L2 206 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 MSANTD2Q6P1R3 559 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 CCDC149Q6ZUS6 474 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 H2AFVQ71UI9 128 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 SCD5Q86SK9 330 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 ERICH1Q86X53 443 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 NUP93Q8N1F7 819 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 SCAMP5Q8TAC9 235 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 FEZF2Q8TBJ5 459 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 IPO4Q8TEX9 1081 aaKnown RBP11.09□□□□□ -0.63
VPS33A-204ENST00000540669 FNIP1Q8TF40 1166 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 CLEC4CQ8WTT0 213 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 OVCA2Q8WZ82 227 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 SEPT5Q99719 369 aaPredicted RBP11.09□□□□□ -0.63
VPS33A-204ENST00000540669 ADAM33Q9BZ11 813 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 ULBP1Q9BZM6 244 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 MIS12Q9H081 205 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 CYP4F11Q9HBI6 524 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 ZNF334Q9HCZ1 680 aaPredicted RBP11.09□□□□□ -0.63
VPS33A-204ENST00000540669 DZANK1Q9NVP4 752 aa11.09□□□□□ -0.63
VPS33A-204ENST00000540669 THEGQ9P2T0 379 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms