RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 THG1LQ9NWX6 298 aaKnown RBP18.04■□□□□ 0.48
VIM-205ENST00000485947 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.04■□□□□ 0.481e-22■■□□□ 12.7
VIM-205ENST00000485947 MYBPHLA2RUH7 354 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 FAM170BA6NMN3 283 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 NRG2O14511 850 aaPredicted RBP18.03■□□□□ 0.48
VIM-205ENST00000485947 ASS1P00966 412 aaKnown RBP18.03■□□□□ 0.48
VIM-205ENST00000485947 F11P03951 625 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 TBXAS1P24557 533 aaPredicted RBP18.03■□□□□ 0.48
VIM-205ENST00000485947 CYP2F1P24903 491 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 VIPR2P41587 438 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 STAT1P42224 750 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 CDK17Q00537 523 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 APBA1Q02410 837 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 LRMPQ12912 555 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 RAPGEF1Q13905 1077 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 GRM2Q14416 872 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 ZNF268Q14587 947 aaPredicted RBP18.03■□□□□ 0.48
VIM-205ENST00000485947 SFMBT2Q5VUG0 894 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 SCARA3Q6AZY7 606 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 MAMSTRQ6ZN01 415 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 TPRG1Q6ZUI0 275 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 ERMP1Q7Z2K6 904 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 MON1AQ86VX9 555 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 TMTC1Q8IUR5 882 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 TMEM139Q8IV31 216 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 C1orf210Q8IVY1 113 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 ARHGEF19Q8IW93 802 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 CMTM8Q8IZV2 173 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 PPM1KQ8N3J5 372 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 GIPC2Q8TF65 315 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 JAKMIP2Q96AA8 810 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 FAM84AQ96KN4 292 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 UBE2TQ9NPD8 197 aaPredicted RBP18.03■□□□□ 0.48
VIM-205ENST00000485947 HEBP1Q9NRV9 189 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 AIPL1Q9NZN9 384 aa18.03■□□□□ 0.48
VIM-205ENST00000485947 ARNTLO00327 626 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 TRIM66O15016 1216 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 ARHGAP6O43182 974 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 CCDC172P0C7W6 258 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 SKILP12757 684 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 LMO2P25791 158 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 AVPR1AP37288 418 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 PPP3CCP48454 512 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 PDE6CP51160 858 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 MYL6P60660 151 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 NOP14P78316 857 aaKnown RBP18.02■□□□□ 0.48
VIM-205ENST00000485947 ZNF667Q5HYK9 610 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 GJB7Q6PEY0 223 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 OR6B3Q8NGW1 331 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 BPIFB1Q8TDL5 484 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 CSGALNACT1Q8TDX6 532 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 TNIP3Q96KP6 325 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 SLC46A2Q9BY10 475 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 FOXQ1Q9C009 403 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 CRTAC1Q9NQ79 661 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 ZKSCAN5Q9Y2L8 839 aa18.02■□□□□ 0.48
VIM-205ENST00000485947 SLC38A8A6NNN8 435 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 F8VZ95 297 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 LRRN2O75325 713 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 DCNP07585 359 aaKnown RBP18.01■□□□□ 0.47
VIM-205ENST00000485947 FERP16591 822 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 ANXA13P27216 316 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 DRAP1Q14919 205 aaPredicted RBP18.01■□□□□ 0.47
VIM-205ENST00000485947 UBXN2BQ14CS0 331 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 ASIC2Q16515 512 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 DDR2Q16832 855 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 ZNF699Q32M78 642 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 ZNF528Q3MIS6 628 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 TMEM150AQ86TG1 271 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 PCED1BQ96HM7 432 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 C8orf48Q96LL4 319 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 ZNF830Q96NB3 372 aaPredicted RBP18.01■□□□□ 0.47
VIM-205ENST00000485947 ELOVL4Q9GZR5 314 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 AJAP1Q9UKB5 411 aaPredicted RBP18.01■□□□□ 0.47
VIM-205ENST00000485947 FBXO4Q9UKT5 387 aa18.01■□□□□ 0.47
VIM-205ENST00000485947 PDGFRBP09619 1106 aa18■□□□□ 0.47
VIM-205ENST00000485947 PTPN1P18031 435 aaKnown RBP18■□□□□ 0.47
VIM-205ENST00000485947 SOX5P35711 763 aa18■□□□□ 0.47
VIM-205ENST00000485947 PRKCIP41743 596 aa18■□□□□ 0.47
VIM-205ENST00000485947 MAPK8IP2Q13387 824 aaPredicted RBP18■□□□□ 0.47
VIM-205ENST00000485947 STXBP5Q5T5C0 1151 aa18■□□□□ 0.47
VIM-205ENST00000485947 WDR59Q6PJI9 974 aa18■□□□□ 0.47
VIM-205ENST00000485947 ZC3H14Q6PJT7 736 aaKnown RBP18■□□□□ 0.47
VIM-205ENST00000485947 DENND5BQ6ZUT9 1274 aa18■□□□□ 0.47
VIM-205ENST00000485947 ASCL5Q7RTU5 278 aa18■□□□□ 0.47
VIM-205ENST00000485947 RALGPS2Q86X27 583 aaPredicted RBP18■□□□□ 0.47
VIM-205ENST00000485947 KIAA1958Q8N8K9 716 aa18■□□□□ 0.47
VIM-205ENST00000485947 SHC3Q92529 594 aa18■□□□□ 0.47
VIM-205ENST00000485947 TATDN2Q93075 761 aa18■□□□□ 0.47
VIM-205ENST00000485947 MYLPFQ96A32 169 aa18■□□□□ 0.47
VIM-205ENST00000485947 MRPL45Q9BRJ2 306 aaKnown RBP18■□□□□ 0.47
VIM-205ENST00000485947 NIF3L1Q9GZT8 377 aa18■□□□□ 0.47
VIM-205ENST00000485947 FAM124BQ9H5Z6 455 aaPredicted RBP18■□□□□ 0.47
VIM-205ENST00000485947 TDP1Q9NUW8 608 aa18■□□□□ 0.47
VIM-205ENST00000485947 NXF1Q9UBU9 619 aaKnown RBP18■□□□□ 0.47
VIM-205ENST00000485947 BZW2Q9Y6E2 419 aaKnown RBP18■□□□□ 0.47
VIM-205ENST00000485947 PIAS3Q9Y6X2 628 aa18■□□□□ 0.47
VIM-205ENST00000485947 ATP8B3O60423 1300 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 SSU72P8A0A1W2PR75 194 aa17.99■□□□□ 0.47
VIM-205ENST00000485947 A8MXQ7 604 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms