RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, human

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLIRP-208	ENST00000556956	GALNT17	Q6IS24	598 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	HIBCH	Q6NVY1	386 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	TTI2	Q6NXR4	508 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	PKN3	Q6P5Z2	889 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	PDXDC1	Q6P996	788 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	FOXR2	Q6PJQ5	311 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	RRAGA	Q7L523	313 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	FAM228A	Q86W67	206 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	OSTM1	Q86WC4	334 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	CIR1	Q86X95	450 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	C2CD5	Q86YS7	1000 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	THEMIS	Q8N1K5	641 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	GBP7	Q8N8V2	638 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	GIMAP8	Q8ND71	665 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	PCDH19	Q8TAB3	1148 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	ACTRT1	Q8TDG2	376 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	SMCR8	Q8TEV9	937 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	UBLCP1	Q8WVY7	318 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCT6B	Q92526	530 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	STAM	Q92783	540 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	AJUBA	Q96IF1	538 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	MS4A14	Q96JA4	679 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	CNOT6L	Q96LI5	555 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	AK8	Q96MA6	479 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	WWC2-AS2	Q96NR7	200 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	RAB3IP	Q96QF0	476 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	XPO6	Q96QU8	1125 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	PSMD1	Q99460	953 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	C7orf25	Q9BPX7	421 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	ISCA1	Q9BUE6	129 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	TLR10	Q9BXR5	811 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	TRIM7	Q9C029	511 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCSER1	Q9C0I3	900 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	TMX4	Q9H1E5	349 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	MMRN2	Q9H8L6	949 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	PIH1D3	Q9NQM4	214 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	SH3GLB2	Q9NR46	395 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	CNNM1	Q9NRU3	951 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	TCP11L1	Q9NUJ3	509 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	SAMD15	Q9P1V8	674 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	CPSF2	Q9P2I0	782 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	PPARGC1A	Q9UBK2	798 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	FAM153A	Q9UHL3	310 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZFP69B	Q9UJL9	534 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	ANAPC4	Q9UJX5	808 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	ADAM29	Q9UKF5	820 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	CORO1C	Q9ULV4	474 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	TFR2	Q9UP52	801 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	SRPK3	Q9UPE1	567 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	GDA	Q9Y2T3	454 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	C15orf41	Q9Y2V0	281 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	UTP11	Q9Y3A2	253 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	MRPS23	Q9Y3D9	190 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	TRAF6	Q9Y4K3	522 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	SLC4A4	Q9Y6R1	1079 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	TCHH	Q07283	1943 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	PNPLA7	Q6ZV29	1317 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	KIF1A	Q12756	1690 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	STRCP1	A6NGW2	1772 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	DISP2	A7MBM2	1401 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	ATRN	O75882	1429 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	BCL9L	Q86UU0	1499 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	PVALEF	A0A1B0GWK0	134 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	TRIM49B	A6NDI0	452 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCDC169	A6NNP5	214 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	GSG1L2	A8MUP6	293 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956		E7ENQ6	273 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956		H0YGN5	161 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	UBE2Q2L	H0YL09	131 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	ARVCF	O00192	962 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZNF263	O14978	683 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	RAD51C	O43502	376 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	NCK2	O43639	380 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	BUB1	O43683	1085 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	AHCYL1	O43865	530 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	KLRC4	O43908	158 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	B4GALT3	O60512	393 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	CLASP2	O75122	1294 aa	Known RBP	3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	ATP2C2	O75185	946 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	PALM	O75781	387 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	ATP5H	O75947	161 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	MBD4	O95243	580 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	CRTAM	O95727	393 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	GNA14	O95837	355 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	KNG1	P01042	644 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	VIM	P08670	466 aa	Known RBP	3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	CLTA	P09496	248 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	SRGAP2C	P0DJJ0	459 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	NEFH	P12036	1026 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	ALAD	P13716	330 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	SLC5A1	P13866	664 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	NQO1	P15559	274 aa	Known RBP	3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	PECAM1	P16284	738 aa	Predicted RBP	3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	FER	P16591	822 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	IBSP	P21815	317 aa	Predicted RBP	3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	ANXA13	P27216	316 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	TMOD1	P28289	359 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	POLD1	P28340	1107 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	CXCR5	P32302	372 aa		3.09	□□□□□ -1.91
SLIRP-208	ENST00000556956	MCM7	P33993	719 aa		3.09	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms