RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 LRRC8CQ8TDW0 803 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 FBF1Q8TES7 1133 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 OTUD5Q96G74 571 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 TWNKQ96RR1 684 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 ADPGKQ9BRR6 497 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 ACSS3Q9H6R3 686 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 KIF9Q9HAQ2 790 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 IFT122Q9HBG6 1241 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 C22orf31O95567 290 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 IQCF3P0C7M6 154 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 ZNF143P52747 638 aaPredicted RBP22.24■■□□□ 1.15
VPS28-205ENST00000526204 DNAJC3Q13217 504 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 SETDB1Q15047 1291 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 HHATQ5VTY9 493 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 ADGRD1Q6QNK2 874 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 ECHDC2Q86YB7 292 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 UNC45BQ8IWX7 931 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 DHRS4Q9BTZ2 278 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 MAK16Q9BXY0 300 aaKnown RBP22.24■■□□□ 1.15
VPS28-205ENST00000526204 R3HDMLQ9H3Y0 253 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 ARHGEF3Q9NR81 526 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 BAIAP2L1Q9UHR4 511 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 KIAA1257Q9ULG3 409 aa22.24■■□□□ 1.15
VPS28-205ENST00000526204 PSMC4P43686 418 aa22.23■■□□□ 1.15
VPS28-205ENST00000526204 MGAT5Q09328 741 aa22.23■■□□□ 1.15
VPS28-205ENST00000526204 IFNLR1Q8IU57 520 aaPredicted RBP22.23■■□□□ 1.15
VPS28-205ENST00000526204 SULF1Q8IWU6 871 aa22.23■■□□□ 1.15
VPS28-205ENST00000526204 PALM2Q8IXS6 379 aa22.23■■□□□ 1.15
VPS28-205ENST00000526204 HSPH1Q92598 858 aa22.23■■□□□ 1.15
VPS28-205ENST00000526204 DCPSQ96C86 337 aaKnown RBP22.23■■□□□ 1.15
VPS28-205ENST00000526204 HEXIM2Q96MH2 286 aaKnown RBP22.23■■□□□ 1.15
VPS28-205ENST00000526204 CNPY3Q9BT09 278 aa22.23■■□□□ 1.15
VPS28-205ENST00000526204 CALN1Q9BXU9 219 aa22.23■■□□□ 1.15
VPS28-205ENST00000526204 ELP3Q9H9T3 547 aa22.23■■□□□ 1.15
VPS28-205ENST00000526204 RBPJLQ9UBG7 517 aa22.23■■□□□ 1.15
VPS28-205ENST00000526204 USH1CQ9Y6N9 552 aa22.23■■□□□ 1.15
VPS28-205ENST00000526204 IGF2BP3O00425 579 aaKnown RBP eCLIP22.22■■□□□ 1.15
VPS28-205ENST00000526204 RBP3P10745 1247 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 CCNB1P14635 433 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 EZRP15311 586 aaKnown RBP22.22■■□□□ 1.15
VPS28-205ENST00000526204 KRT4P19013 534 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 YARSP54577 528 aaKnown RBP22.22■■□□□ 1.15
VPS28-205ENST00000526204 KCNJ2P63252 427 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 ORC1Q13415 861 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 MSS51Q4VC12 460 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 FAM47CQ5HY64 1035 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 FAM102AQ5T9C2 384 aaPredicted RBP22.22■■□□□ 1.15
VPS28-205ENST00000526204 ASRGL1Q7L266 308 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 CEP57Q86XR8 500 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 FAM71DQ8N9W8 422 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 ALKBH8Q96BT7 664 aaKnown RBP22.22■■□□□ 1.15
VPS28-205ENST00000526204 C10orf88Q9H8K7 445 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 TXNRD2Q9NNW7 524 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 HMGXB4Q9UGU5 601 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 XPO7Q9UIA9 1087 aaKnown RBP22.22■■□□□ 1.15
VPS28-205ENST00000526204 A0A1W2PPM1 405 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 EDF1O60869 148 aaKnown RBP22.22■■□□□ 1.15
VPS28-205ENST00000526204 BANF1O75531 89 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 ATP5HO75947 161 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 ALDH3A1P30838 453 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 SSTR1P30872 391 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 RNASELQ05823 741 aaKnown RBP22.22■■□□□ 1.15
VPS28-205ENST00000526204 TFDP2Q14188 446 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 DPYSL3Q14195 570 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 FBXO36Q8NEA4 188 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 SPATA18Q8TC71 538 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 COPS5Q92905 334 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 HPDLQ96IR7 371 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 RNPEPQ9H4A4 650 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 MROH8Q9H579 483 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 PNMA3Q9UL41 463 aa22.22■■□□□ 1.15
VPS28-205ENST00000526204 BARX2Q9UMQ3 279 aaPredicted RBP22.22■■□□□ 1.15
VPS28-205ENST00000526204 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP22.21■■□□□ 1.15
VPS28-205ENST00000526204 ENDOD1O94919 500 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 ITGBL1O95965 494 aaPredicted RBP22.21■■□□□ 1.15
VPS28-205ENST00000526204 GAD2Q05329 585 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 MRRFQ96E11 262 aaKnown RBP22.21■■□□□ 1.15
VPS28-205ENST00000526204 PAFAH2Q99487 392 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 TXLNGQ9NUQ3 528 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 ITGA11Q9UKX5 1188 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 SRCAPQ6ZRS2 3230 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 UNC5CO95185 931 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 GPD1P21695 349 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 MSH2P43246 934 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 ROR1Q01973 937 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 INCA1Q0VD86 236 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 MOGSQ13724 837 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 TMEM132DQ14C87 1099 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 SLC1A5Q15758 541 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 AMHR2Q16671 573 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 Q3C1V9 767 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 RPAINQ86UA6 219 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 PDZD7Q9H5P4 517 aa22.21■■□□□ 1.15
VPS28-205ENST00000526204 ASB14A6NK59 587 aa22.2■■□□□ 1.14
VPS28-205ENST00000526204 DCTN3O75935 186 aa22.2■■□□□ 1.14
VPS28-205ENST00000526204 TMEM63AO94886 807 aa22.2■■□□□ 1.14
VPS28-205ENST00000526204 STAU1O95793 577 aaKnown RBP22.2■■□□□ 1.14
VPS28-205ENST00000526204 BASP1P80723 227 aaKnown RBP22.2■■□□□ 1.14
VPS28-205ENST00000526204 NOMO1Q15155 1222 aa22.2■■□□□ 1.14
VPS28-205ENST00000526204 SLC10A6Q3KNW5 377 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms