RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 C2orf71A6NGG8 1288 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 NT5C1B-RDH14C9J2C7 533 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 GOLGA6L22H0YM25 854 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 SCAMP3O14828 347 aaKnown RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 SYN3O14994 580 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 CLIC2O15247 247 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 TRAPPC3O43617 180 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 CALUO43852 315 aaPredicted RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 CPNE3O75131 537 aaKnown RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 B3GAT3O94766 335 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 OAZ2O95190 189 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 KIF4AO95239 1232 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 MBD3O95983 291 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 NR3C1P04150 777 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 CYP11A1P05108 521 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 RPL13P26373 211 aaKnown RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 GRNP28799 593 aaKnown RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 PBX3P40426 434 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 OR1G1P47890 313 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 CLCN5P51795 746 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 AP3M2P53677 418 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 LILRA4P59901 499 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 FKBP3Q00688 224 aaKnown RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 LRRC63Q05C16 580 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 CYP24A1Q07973 514 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 ADAM9Q13443 819 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 SNRNP35Q16560 246 aaKnown RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 DUSP6Q16828 381 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 USP41Q3LFD5 358 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 C1orf220Q5T0J3 134 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 SPOUT1Q5T280 376 aaKnown RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 C9orf57Q5W0N0 161 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 ANKRD40Q6AI12 368 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 JADE1Q6IE81 842 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 TTI2Q6NXR4 508 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 FUT10Q6P4F1 479 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 LILRA6Q6PI73 481 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 C15orf39Q6ZRI6 1047 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 RTL10Q7L3V2 364 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 TAS1R1Q7RTX1 841 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 CBWD2Q8IUF1 395 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 WDR49Q8IV35 697 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 NELFCDQ8IXH7 590 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 EFCAB13Q8IY85 973 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 VPS52Q8N1B4 723 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 LRRC52Q8N7C0 313 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 EFHBQ8N7U6 833 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 MLKLQ8NB16 471 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 LNX1Q8TBB1 728 aaPredicted RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 SPATA18Q8TC71 538 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 PLEKHO2Q8TD55 490 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 SLC22A17Q8WUG5 538 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 HDAC7Q8WUI4 952 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 CACTINQ8WUQ7 758 aaKnown RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 ERCC4Q92889 916 aaPredicted RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 C18orf25Q96B23 403 aaPredicted RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 SAAL1Q96ER3 474 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 MED15Q96RN5 788 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 PHF7Q9BWX1 381 aaPredicted RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 OXCT2Q9BYC2 517 aaPredicted RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 RHOBTB2Q9BYZ6 727 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 PCIF1Q9H4Z3 704 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 PDE11AQ9HCR9 933 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 INTS13Q9NVM9 706 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 GDAP2Q9NXN4 497 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 RBAKQ9NYW8 714 aaPredicted RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 CLEC1BQ9P126 229 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 NCDNQ9UBB6 729 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 SIX4Q9UIU6 781 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 FOXD3Q9UJU5 478 aaPredicted RBP7.26□□□□□ -1.25
VPS52-219ENST00000493379 USP18Q9UMW8 372 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 DYRK1BQ9Y463 629 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 BACE2Q9Y5Z0 518 aa7.26□□□□□ -1.25
VPS52-219ENST00000493379 CACNA1IQ9P0X4 2223 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 SPTA1P02549 2419 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 CASTOR2A6NHX0 329 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 PRR5-ARHGAP8B1AHC4 643 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 F8W810 466 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 PODXLO00592 558 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 EXOC3O60645 756 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 TADA2AO75478 443 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 AKAP3O75969 853 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 CXCL14O95715 111 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 C4BPAP04003 597 aaKnown RBP7.25□□□□□ -1.25
VPS52-219ENST00000493379 NFICP08651 508 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 TYMPP19971 482 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 ERCC5P28715 1186 aaPredicted RBP7.25□□□□□ -1.25
VPS52-219ENST00000493379 PNPLA4P41247 253 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 CASP4P49662 377 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 NDUFV1P49821 464 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 PMS1P54277 932 aaKnown RBP7.25□□□□□ -1.25
VPS52-219ENST00000493379 ARHGAP8P85298 464 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 SHC2P98077 582 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 LMNB2Q03252 620 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 SMC1AQ14683 1233 aaKnown RBP7.25□□□□□ -1.25
VPS52-219ENST00000493379 BMS1Q14692 1282 aaKnown RBP7.25□□□□□ -1.25
VPS52-219ENST00000493379 TMEM132DQ14C87 1099 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 PTPN14Q15678 1187 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 DUOXA2Q1HG44 320 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 GLRA4Q5JXX5 417 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms