RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 TRIML1Q8N9V2 468 aa14.65□□□□□ -0.06
SHMT2-219ENST00000555563 PCED1BQ96HM7 432 aa14.65□□□□□ -0.06
SHMT2-219ENST00000555563 ZSWIM3Q96MP5 696 aa14.65□□□□□ -0.06
SHMT2-219ENST00000555563 DUSP9Q99956 384 aaKnown RBP14.65□□□□□ -0.06
SHMT2-219ENST00000555563 IMPG2Q9BZV3 1241 aa14.65□□□□□ -0.06
SHMT2-219ENST00000555563 CLSTN2Q9H4D0 955 aa14.65□□□□□ -0.06
SHMT2-219ENST00000555563 RTN4Q9NQC3 1192 aaKnown RBP14.65□□□□□ -0.06
SHMT2-219ENST00000555563 KIAA1468Q9P260 1216 aa14.65□□□□□ -0.06
SHMT2-219ENST00000555563 LRRN2O75325 713 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 CFHP08603 1231 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 P4HA1P13674 534 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 HMGA1P17096 107 aaKnown RBP14.64□□□□□ -0.07
SHMT2-219ENST00000555563 GABRR2P28476 465 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 MAGEA11P43364 429 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 MRE11P49959 708 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 RPL10AP62906 217 aaKnown RBP14.64□□□□□ -0.07
SHMT2-219ENST00000555563 PAK1Q13153 545 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 DDR2Q16832 855 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 STXBP5Q5T5C0 1151 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 TCERG1LQ5VWI1 586 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 KRT39Q6A163 491 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 BMP8AQ7Z5Y6 402 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 SCN4BQ8IWT1 228 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 B3GALNT2Q8NCR0 500 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 MYCBPAPQ8TBZ2 947 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 PBXIP1Q96AQ6 731 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 CEP63Q96MT8 703 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 ASB16Q96NS5 453 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 SLITRK6Q9H5Y7 841 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 IL21Q9HBE4 155 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 APOBEC3GQ9HC16 384 aaKnown RBP14.64□□□□□ -0.07
SHMT2-219ENST00000555563 HMGXB4Q9UGU5 601 aa14.64□□□□□ -0.07
SHMT2-219ENST00000555563 OBSL1O75147 1896 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 KMT2EQ8IZD2 1858 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 BICDL2A1A5D9 508 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 STX10O60499 249 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 ECI2O75521 394 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 FGF19O95750 216 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 PTPN1P18031 435 aaKnown RBP14.63□□□□□ -0.07
SHMT2-219ENST00000555563 BDNFP23560 247 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 CDC25CP30307 473 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 STX17P56962 302 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 NHLH1Q02575 133 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 TAF12Q16514 161 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 CBWD6Q4V339 395 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 CBWD3Q5JTY5 395 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 CBWD5Q5RIA9 395 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 TANGO2Q6ICL3 276 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 FOXR2Q6PJQ5 311 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 ZSCAN18Q8TBC5 510 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-219ENST00000555563 SEMA4DQ92854 862 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 GBP4Q96PP9 640 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 BCO2Q9BYV7 579 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 NIF3L1Q9GZT8 377 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 ATXN3LQ9H3M9 355 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 SLC2A4RGQ9NR83 387 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 LMBRD1Q9NUN5 540 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 MAGEC2Q9UBF1 373 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-219ENST00000555563 ARMCX3Q9UH62 379 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-219ENST00000555563 FBXL21Q9UKT6 434 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 MAGED2Q9UNF1 606 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-219ENST00000555563 NCANO14594 1321 aa14.63□□□□□ -0.07
SHMT2-219ENST00000555563 SLC38A8A6NNN8 435 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 CLDN5O00501 218 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 NOL4O94818 638 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 CSH1P0DML2 217 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 CSH2P0DML3 217 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 CYP4F8P98187 520 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 ORC1Q13415 861 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 CCDC40Q4G0X9 1142 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 ARHGAP15Q53QZ3 475 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 GPR158Q5T848 1215 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 VSTM1Q6UX27 236 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 TMEM150AQ86TG1 271 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 SUGP1Q8IWZ8 645 aaKnown RBP14.62□□□□□ -0.07
SHMT2-219ENST00000555563 SIX5Q8N196 739 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 FBXL6Q8N531 539 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 FBXL13Q8NEE6 735 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 NUP210Q8TEM1 1887 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-219ENST00000555563 SMARCD2Q92925 531 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 SLC35C1Q96A29 364 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 ELSPBP1Q96BH3 223 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 GCNAQ96QF7 691 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 PLA2G2FQ9BZM2 168 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 ZNF518BQ9C0D4 1074 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 ELOVL4Q9GZR5 314 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 TMEM30AQ9NV96 361 aa14.62□□□□□ -0.07
SHMT2-219ENST00000555563 GREB1Q4ZG55 1949 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 TADA3O75528 432 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 GRIK1P39086 918 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 VIPR2P41587 438 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 NDST1P52848 882 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 CACNA2D1P54289 1103 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 NLRP12P59046 1061 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 GPC5P78333 572 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 INCA1Q0VD86 236 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 GRM2Q14416 872 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 FILIP1Q7Z7B0 1213 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 ACOT1Q86TX2 421 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 FAM35AQ86V20 835 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms