RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 KCNK9Q9NPC2 374 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.12■□□□□ 0.97
VPS53-201ENST00000291074 ADORA2AP29274 412 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 PTPN7P35236 360 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 UBA3Q8TBC4 463 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 AGAP1Q9UPQ3 857 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 NAALADL1Q9UQQ1 740 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 ATP2C2O75185 946 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 FSBPO95073 299 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 GH1P01241 217 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 OTUD4Q01804 1114 aaKnown RBP21.12■□□□□ 0.97
VPS53-201ENST00000291074 MKRN3Q13064 507 aaKnown RBP21.12■□□□□ 0.97
VPS53-201ENST00000291074 LAMC2Q13753 1193 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 ILDR2Q71H61 639 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 TAX1BP1Q86VP1 789 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 TAB3Q8N5C8 712 aaPredicted RBP21.12■□□□□ 0.97
VPS53-201ENST00000291074 ACTL9Q8TC94 416 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 DYDC1Q8WWB3 177 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 TMEM176AQ96HP8 235 aa21.12■□□□□ 0.97
VPS53-201ENST00000291074 KAT6AQ92794 2004 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 GDF10P55107 478 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 FAM187BQ17R55 369 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 MAP1SQ66K74 1059 aaPredicted RBP21.11■□□□□ 0.97
VPS53-201ENST00000291074 POLNQ7Z5Q5 900 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 RELL1Q8IUW5 271 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 SRRM1Q8IYB3 904 aaKnown RBP21.11■□□□□ 0.97
VPS53-201ENST00000291074 NLRP7Q8WX94 980 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 NKD2Q969F2 451 aaPredicted RBP21.11■□□□□ 0.97
VPS53-201ENST00000291074 HPDLQ96IR7 371 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 CCDC134Q9H6E4 229 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 TPX2Q9ULW0 747 aaKnown RBP21.11■□□□□ 0.97
VPS53-201ENST00000291074 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.11■□□□□ 0.97
VPS53-201ENST00000291074 GOLGA6L7A0A1B0GV03 622 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 GOLGA8MH3BSY2 632 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 CST8O60676 142 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 BANF1O75531 89 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 BRAFP15056 766 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 EPHX2P34913 555 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 ZNF792Q3KQV3 632 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 SLC35B2Q8TB61 432 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 ELAC2Q9BQ52 826 aaKnown RBP21.11■□□□□ 0.97
VPS53-201ENST00000291074 CXCL16Q9H2A7 254 aa21.11■□□□□ 0.97
VPS53-201ENST00000291074 DRG1Q9Y295 367 aaKnown RBP21.11■□□□□ 0.97
VPS53-201ENST00000291074 TCEA3O75764 348 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 GAD2Q05329 585 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 SNAPC2Q13487 334 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 TMEM132DQ14C87 1099 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 RAB6CQ53S08 254 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 SHCBP1Q8NEM2 672 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 GDAP1Q8TB36 358 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 HEXIM2Q96MH2 286 aaKnown RBP21.1■□□□□ 0.97
VPS53-201ENST00000291074 C16orf70Q9BSU1 422 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 RAB6CQ9H0N0 254 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 H0YHG0 523 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 DNM1LO00429 736 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 ITGAVP06756 1048 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 YBX3P16989 372 aaKnown RBP eCLIP21.1■□□□□ 0.97
VPS53-201ENST00000291074 ATP5DP30049 168 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 TNFAIP2Q03169 654 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 TMED2Q15363 201 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 RNASEH2BQ5TBB1 312 aaKnown RBP21.1■□□□□ 0.97
VPS53-201ENST00000291074 CCDC13Q8IYE1 715 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 CCDC197Q8NCU1 140 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 CCHCR1Q8TD31 782 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 FBXO41Q8TF61 875 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 PPP1R13LQ8WUF5 828 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 HSPH1Q92598 858 aa21.1■□□□□ 0.97
VPS53-201ENST00000291074 SCN1AP35498 2009 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 CYP3A5P20815 502 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 KDELR1P24390 212 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 ACTN3Q08043 901 aaPredicted RBP21.09■□□□□ 0.97
VPS53-201ENST00000291074 SH3PXD2AQ5TCZ1 1133 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 MTHFD1LQ6UB35 978 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 GPRC5AQ8NFJ5 357 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 PIWIL1Q96J94 861 aaKnown RBP21.09■□□□□ 0.97
VPS53-201ENST00000291074 LGALS13Q9UHV8 139 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 TSPAN1O60635 241 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 CDH16O75309 829 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 MIPP30301 263 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 GPD2P43304 727 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 NDST1P52848 882 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 STAT4Q14765 748 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 ANKRD20A8PQ5CZ79 823 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 FAM182AQ5T1J6 154 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 FAM102AQ5T9C2 384 aaPredicted RBP21.09■□□□□ 0.97
VPS53-201ENST00000291074 PIGWQ7Z7B1 504 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 PPTC7Q8NI37 304 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 FNIP1Q8TF40 1166 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 ASB7Q9H672 318 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 PCDH9Q9HC56 1237 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 EURLQ9NYK6 297 aa21.09■□□□□ 0.97
VPS53-201ENST00000291074 MAGEB2O15479 319 aa21.08■□□□□ 0.97
VPS53-201ENST00000291074 KRT7P08729 469 aa21.08■□□□□ 0.97
VPS53-201ENST00000291074 GCAP28676 217 aa21.08■□□□□ 0.97
VPS53-201ENST00000291074 HADHQ16836 314 aaKnown RBP21.08■□□□□ 0.97
VPS53-201ENST00000291074 IFNLR1Q8IU57 520 aaPredicted RBP21.08■□□□□ 0.97
VPS53-201ENST00000291074 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.08■□□□□ 0.97
VPS53-201ENST00000291074 EXOC1LA0A1B0GW35 172 aa21.08■□□□□ 0.96
VPS53-201ENST00000291074 TCP11X1B4DZS4 312 aa21.08■□□□□ 0.96
VPS53-201ENST00000291074 POU5F1BQ06416 359 aa21.08■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms