RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 PRKCQQ04759 706 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 SNW1Q13573 536 aaKnown RBP20.03■□□□□ 0.8
CLN3-227ENST00000567495 IER5LQ5T953 404 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 CEP135Q66GS9 1140 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 FAM171BQ6P995 826 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 OSTM1Q86WC4 334 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 SPATA2LQ8IUW3 424 aaPredicted RBP20.03■□□□□ 0.8
CLN3-227ENST00000567495 ST13P5Q8NFI4 369 aaPredicted RBP20.03■□□□□ 0.8
CLN3-227ENST00000567495 DEPDC1BQ8WUY9 529 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 KBTBD7Q8WVZ9 684 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 SNX25Q9H3E2 840 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 ATXN3LQ9H3M9 355 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 TMLHEQ9NVH6 421 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 GTF3C4Q9UKN8 822 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 CA14Q9ULX7 337 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 NOTCH4Q99466 2003 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 LRRIQ3A6PVS8 624 aaPredicted RBP20.02■□□□□ 0.8
CLN3-227ENST00000567495 SOBPA7XYQ1 873 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 CSH1P0DML2 217 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 CSH2P0DML3 217 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 FCARP24071 287 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 NR2F2P24468 414 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 ACAT1P24752 427 aaKnown RBP20.02■□□□□ 0.8
CLN3-227ENST00000567495 GABRR2P28476 465 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 GNL1P36915 607 aaPredicted RBP20.02■□□□□ 0.8
CLN3-227ENST00000567495 MAGEA11P43364 429 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 CASP4P49662 377 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 MYL6P60660 151 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 NCOA4Q13772 614 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 EDRF1Q3B7T1 1238 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 CWF19L1Q69YN2 538 aaKnown RBP20.02■□□□□ 0.8
CLN3-227ENST00000567495 INTS8Q75QN2 995 aaKnown RBP20.02■□□□□ 0.8
CLN3-227ENST00000567495 GAREM2Q75VX8 874 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 ELOA2Q8IYF1 753 aaPredicted RBP20.02■□□□□ 0.8
CLN3-227ENST00000567495 TMEM105Q8N8V8 129 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 PLEKHO2Q8TD55 490 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 DNASE1L2Q92874 299 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 CEP295NLQ96MC4 621 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 ZSWIM3Q96MP5 696 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 LPIN3Q9BQK8 851 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 SYT15Q9BQS2 421 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 PI4K2AQ9BTU6 479 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 TRMT61BQ9BVS5 477 aaKnown RBP20.02■□□□□ 0.8
CLN3-227ENST00000567495 XYLT2Q9H1B5 865 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 TBC1D17Q9HA65 648 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 MAPK8IP1Q9UQF2 711 aa20.02■□□□□ 0.8
CLN3-227ENST00000567495 GALR2O43603 387 aaPredicted RBP20.01■□□□□ 0.79
CLN3-227ENST00000567495 C4BPAP04003 597 aaKnown RBP20.01■□□□□ 0.79
CLN3-227ENST00000567495 P4HA1P13674 534 aa20.01■□□□□ 0.79
CLN3-227ENST00000567495 GJA1P17302 382 aa20.01■□□□□ 0.79
CLN3-227ENST00000567495 PSMC3P17980 439 aa20.01■□□□□ 0.79
CLN3-227ENST00000567495 WEE1P30291 646 aa20.01■□□□□ 0.79
CLN3-227ENST00000567495 PSMC2P35998 433 aaKnown RBP20.01■□□□□ 0.79
CLN3-227ENST00000567495 STARD6P59095 220 aa20.01■□□□□ 0.79
CLN3-227ENST00000567495 PNOCQ13519 176 aa20.01■□□□□ 0.79
CLN3-227ENST00000567495 SLC44A4Q53GD3 710 aa20.01■□□□□ 0.79
CLN3-227ENST00000567495 TDRD10Q5VZ19 366 aaKnown RBP20.01■□□□□ 0.79
CLN3-227ENST00000567495 POTEHQ6S545 545 aa20.01■□□□□ 0.79
CLN3-227ENST00000567495 VSTM1Q6UX27 236 aa20.01■□□□□ 0.79
CLN3-227ENST00000567495 GIPC2Q8TF65 315 aa20.01■□□□□ 0.79
CLN3-227ENST00000567495 TAF4BQ92750 862 aa20.01■□□□□ 0.79
CLN3-227ENST00000567495 ZNF334Q9HCZ1 680 aaPredicted RBP20.01■□□□□ 0.79
CLN3-227ENST00000567495 UXTQ9UBK9 157 aaPredicted RBP20.01■□□□□ 0.79
CLN3-227ENST00000567495 CACNA1HO95180 2353 aa20.01■□□□□ 0.79
CLN3-227ENST00000567495 PIEZO1Q92508 2521 aa20■□□□□ 0.79
CLN3-227ENST00000567495 MYBPHLA2RUH7 354 aa20■□□□□ 0.79
CLN3-227ENST00000567495 KRT13P13646 458 aa20■□□□□ 0.79
CLN3-227ENST00000567495 CYP2F1P24903 491 aa20■□□□□ 0.79
CLN3-227ENST00000567495 LMO2P25791 158 aa20■□□□□ 0.79
CLN3-227ENST00000567495 DDX6P26196 483 aaKnown RBP eCLIP20■□□□□ 0.79
CLN3-227ENST00000567495 VAMP7P51809 220 aa20■□□□□ 0.79
CLN3-227ENST00000567495 ADAM9Q13443 819 aa20■□□□□ 0.79
CLN3-227ENST00000567495 SGSM1Q2NKQ1 1148 aa20■□□□□ 0.79
CLN3-227ENST00000567495 ZNF699Q32M78 642 aa20■□□□□ 0.79
CLN3-227ENST00000567495 ZACNQ401N2 412 aa20■□□□□ 0.79
CLN3-227ENST00000567495 ZCWPW2Q504Y3 356 aa20■□□□□ 0.79
CLN3-227ENST00000567495 COBLL1Q53SF7 1204 aa20■□□□□ 0.79
CLN3-227ENST00000567495 ZNF667Q5HYK9 610 aa20■□□□□ 0.79
CLN3-227ENST00000567495 PRSS33Q8NF86 280 aa20■□□□□ 0.79
CLN3-227ENST00000567495 SPATA20Q8TB22 786 aa20■□□□□ 0.79
CLN3-227ENST00000567495 MYCBPAPQ8TBZ2 947 aa20■□□□□ 0.79
CLN3-227ENST00000567495 IRF7Q92985 503 aa20■□□□□ 0.79
CLN3-227ENST00000567495 SMARCE1Q969G3 411 aa20■□□□□ 0.79
CLN3-227ENST00000567495 PLA2G2FQ9BZM2 168 aa20■□□□□ 0.79
CLN3-227ENST00000567495 TASP1Q9H6P5 420 aa20■□□□□ 0.79
CLN3-227ENST00000567495 BRD9Q9H8M2 597 aa20■□□□□ 0.79
CLN3-227ENST00000567495 TRPV5Q9NQA5 729 aa20■□□□□ 0.79
CLN3-227ENST00000567495 OBP2AQ9NY56 170 aa20■□□□□ 0.79
CLN3-227ENST00000567495 MAGEC2Q9UBF1 373 aaPredicted RBP20■□□□□ 0.79
CLN3-227ENST00000567495 NXF1Q9UBU9 619 aaKnown RBP20■□□□□ 0.79
CLN3-227ENST00000567495 NRG2O14511 850 aaPredicted RBP19.99■□□□□ 0.79
CLN3-227ENST00000567495 KINO60870 393 aaKnown RBP19.99■□□□□ 0.79
CLN3-227ENST00000567495 PDGFRBP09619 1106 aa19.99■□□□□ 0.79
CLN3-227ENST00000567495 HMGA1P17096 107 aaKnown RBP19.99■□□□□ 0.79
CLN3-227ENST00000567495 NHLH1Q02575 133 aa19.99■□□□□ 0.79
CLN3-227ENST00000567495 MLF2Q15773 248 aaPredicted RBP19.99■□□□□ 0.79
CLN3-227ENST00000567495 GPR158Q5T848 1215 aa19.99■□□□□ 0.79
CLN3-227ENST00000567495 ZNF658Q5TYW1 1059 aaPredicted RBP19.99■□□□□ 0.79
CLN3-227ENST00000567495 SV2AQ7L0J3 742 aa19.99■□□□□ 0.79
CLN3-227ENST00000567495 MFSD6LQ8IWD5 586 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms