RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 TEAD2Q15562 447 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 OSTM1Q86WC4 334 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 SPATA2LQ8IUW3 424 aaPredicted RBP22.08■■□□□ 1.13
VPS28-206ENST00000526734 TMEM105Q8N8V8 129 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 KBTBD7Q8WVZ9 684 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 DNASE1L2Q92874 299 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 CEP295NLQ96MC4 621 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 GSDMAQ96QA5 445 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 SYT15Q9BQS2 421 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 TMLHEQ9NVH6 421 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 CA14Q9ULX7 337 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 LRRIQ3A6PVS8 624 aaPredicted RBP22.07■■□□□ 1.12
VPS28-206ENST00000526734 IKBKBO14920 756 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 GALR2O43603 387 aaPredicted RBP22.07■■□□□ 1.12
VPS28-206ENST00000526734 CST3P01034 146 aaPredicted RBP22.07■■□□□ 1.12
VPS28-206ENST00000526734 ACAT1P24752 427 aaKnown RBP22.07■■□□□ 1.12
VPS28-206ENST00000526734 GABRR2P28476 465 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 WEE1P30291 646 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 MAGEA11P43364 429 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 WDR72Q3MJ13 1102 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 CEP135Q66GS9 1140 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 SCARA3Q6AZY7 606 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 TANGO2Q6ICL3 276 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 FAM171BQ6P995 826 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 PRSS33Q8NF86 280 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 ENGASEQ8NFI3 743 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 ZSCAN18Q8TBC5 510 aaPredicted RBP22.07■■□□□ 1.12
VPS28-206ENST00000526734 ZNF516Q92618 1163 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 LPIN3Q9BQK8 851 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 SNX25Q9H3E2 840 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 ATXN3LQ9H3M9 355 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 TBC1D17Q9HA65 648 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 ZNF334Q9HCZ1 680 aaPredicted RBP22.07■■□□□ 1.12
VPS28-206ENST00000526734 GTF3C4Q9UKN8 822 aa22.07■■□□□ 1.12
VPS28-206ENST00000526734 SOBPA7XYQ1 873 aa22.06■■□□□ 1.12
VPS28-206ENST00000526734 NR2F2P24468 414 aa22.06■■□□□ 1.12
VPS28-206ENST00000526734 STARD6P59095 220 aa22.06■■□□□ 1.12
VPS28-206ENST00000526734 MYL6P60660 151 aa22.06■■□□□ 1.12
VPS28-206ENST00000526734 EDRF1Q3B7T1 1238 aa22.06■■□□□ 1.12
VPS28-206ENST00000526734 COBLL1Q53SF7 1204 aa22.06■■□□□ 1.12
VPS28-206ENST00000526734 IER5LQ5T953 404 aa22.06■■□□□ 1.12
VPS28-206ENST00000526734 INTS8Q75QN2 995 aaKnown RBP22.06■■□□□ 1.12
VPS28-206ENST00000526734 GAREM2Q75VX8 874 aa22.06■■□□□ 1.12
VPS28-206ENST00000526734 ELOA2Q8IYF1 753 aaPredicted RBP22.06■■□□□ 1.12
VPS28-206ENST00000526734 PLEKHO2Q8TD55 490 aa22.06■■□□□ 1.12
VPS28-206ENST00000526734 TAF4BQ92750 862 aa22.06■■□□□ 1.12
VPS28-206ENST00000526734 PI4K2AQ9BTU6 479 aa22.06■■□□□ 1.12
VPS28-206ENST00000526734 TRMT61BQ9BVS5 477 aaKnown RBP22.06■■□□□ 1.12
VPS28-206ENST00000526734 XYLT2Q9H1B5 865 aa22.06■■□□□ 1.12
VPS28-206ENST00000526734 OBP2AQ9NY56 170 aa22.06■■□□□ 1.12
VPS28-206ENST00000526734 UXTQ9UBK9 157 aaPredicted RBP22.06■■□□□ 1.12
VPS28-206ENST00000526734 STK25O00506 426 aa22.05■■□□□ 1.12
VPS28-206ENST00000526734 P4HA1P13674 534 aa22.05■■□□□ 1.12
VPS28-206ENST00000526734 GJA1P17302 382 aa22.05■■□□□ 1.12
VPS28-206ENST00000526734 PSMC3P17980 439 aa22.05■■□□□ 1.12
VPS28-206ENST00000526734 DDX6P26196 483 aaKnown RBP eCLIP22.05■■□□□ 1.12
VPS28-206ENST00000526734 CASP4P49662 377 aa22.05■■□□□ 1.12
VPS28-206ENST00000526734 NHLH1Q02575 133 aa22.05■■□□□ 1.12
VPS28-206ENST00000526734 NCOA4Q13772 614 aa22.05■■□□□ 1.12
VPS28-206ENST00000526734 MLF2Q15773 248 aaPredicted RBP22.05■■□□□ 1.12
VPS28-206ENST00000526734 ZNF699Q32M78 642 aa22.05■■□□□ 1.12
VPS28-206ENST00000526734 ZACNQ401N2 412 aa22.05■■□□□ 1.12
VPS28-206ENST00000526734 TDRD10Q5VZ19 366 aaKnown RBP22.05■■□□□ 1.12
VPS28-206ENST00000526734 POTEHQ6S545 545 aa22.05■■□□□ 1.12
VPS28-206ENST00000526734 VSTM1Q6UX27 236 aa22.05■■□□□ 1.12
VPS28-206ENST00000526734 ST13P5Q8NFI4 369 aaPredicted RBP22.05■■□□□ 1.12
VPS28-206ENST00000526734 TASP1Q9H6P5 420 aa22.05■■□□□ 1.12
VPS28-206ENST00000526734 TRPV5Q9NQA5 729 aa22.05■■□□□ 1.12
VPS28-206ENST00000526734 C4BPAP04003 597 aaKnown RBP22.04■■□□□ 1.12
VPS28-206ENST00000526734 KRT13P13646 458 aa22.04■■□□□ 1.12
VPS28-206ENST00000526734 GNL1P36915 607 aaPredicted RBP22.04■■□□□ 1.12
VPS28-206ENST00000526734 PNOCQ13519 176 aa22.04■■□□□ 1.12
VPS28-206ENST00000526734 ZCWPW2Q504Y3 356 aa22.04■■□□□ 1.12
VPS28-206ENST00000526734 SLC44A4Q53GD3 710 aa22.04■■□□□ 1.12
VPS28-206ENST00000526734 ZNF667Q5HYK9 610 aa22.04■■□□□ 1.12
VPS28-206ENST00000526734 MFSD6LQ8IWD5 586 aa22.04■■□□□ 1.12
VPS28-206ENST00000526734 SPATA20Q8TB22 786 aa22.04■■□□□ 1.12
VPS28-206ENST00000526734 GIPC2Q8TF65 315 aa22.04■■□□□ 1.12
VPS28-206ENST00000526734 IRF7Q92985 503 aa22.04■■□□□ 1.12
VPS28-206ENST00000526734 TRMT2BQ96GJ1 504 aaKnown RBP22.04■■□□□ 1.12
VPS28-206ENST00000526734 ZSWIM3Q96MP5 696 aa22.04■■□□□ 1.12
VPS28-206ENST00000526734 MKNK1Q9BUB5 465 aa22.04■■□□□ 1.12
VPS28-206ENST00000526734 BRD9Q9H8M2 597 aa22.04■■□□□ 1.12
VPS28-206ENST00000526734 IL21Q9HBE4 155 aa22.04■■□□□ 1.12
VPS28-206ENST00000526734 MAGEC2Q9UBF1 373 aaPredicted RBP22.04■■□□□ 1.12
VPS28-206ENST00000526734 MYBPHLA2RUH7 354 aa22.03■■□□□ 1.12
VPS28-206ENST00000526734 NRG2O14511 850 aaPredicted RBP22.03■■□□□ 1.12
VPS28-206ENST00000526734 CYP2F1P24903 491 aa22.03■■□□□ 1.12
VPS28-206ENST00000526734 PSMC2P35998 433 aaKnown RBP22.03■■□□□ 1.12
VPS28-206ENST00000526734 VAMP7P51809 220 aa22.03■■□□□ 1.12
VPS28-206ENST00000526734 SGSM1Q2NKQ1 1148 aa22.03■■□□□ 1.12
VPS28-206ENST00000526734 GPR158Q5T848 1215 aa22.03■■□□□ 1.12
VPS28-206ENST00000526734 ZNF658Q5TYW1 1059 aaPredicted RBP22.03■■□□□ 1.12
VPS28-206ENST00000526734 CCDC105Q8IYK2 499 aa22.03■■□□□ 1.12
VPS28-206ENST00000526734 FAM186BQ8IYM0 893 aa22.03■■□□□ 1.12
VPS28-206ENST00000526734 OR6B3Q8NGW1 331 aa22.03■■□□□ 1.12
VPS28-206ENST00000526734 MYCBPAPQ8TBZ2 947 aa22.03■■□□□ 1.12
VPS28-206ENST00000526734 SMARCE1Q969G3 411 aa22.03■■□□□ 1.12
VPS28-206ENST00000526734 DDX23Q9BUQ8 820 aaKnown RBP22.03■■□□□ 1.12
VPS28-206ENST00000526734 OSBPL6Q9BZF3 934 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms