RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 DICER1Q9UPY3 1922 aaKnown RBP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 DNALI1O14645 258 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-217ENST00000466159 TCEA3O75764 348 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 GH1P01241 217 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 KRT3P12035 628 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 PSMA2P25787 234 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 IL1R2P27930 398 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 HNRNPH1P31943 449 aaKnown RBP9.43□□□□□ -0.9
SYNE1-217ENST00000466159 RAD23BP54727 409 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 DYNLT1P63172 113 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 PLCB3Q01970 1234 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 GPS1Q13098 491 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 FASTKD3Q14CZ7 662 aaKnown RBP9.43□□□□□ -0.9
SYNE1-217ENST00000466159 DRICH1Q6PGQ1 229 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-217ENST00000466159 TAX1BP1Q86VP1 789 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 RELL1Q8IUW5 271 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 EXOC8Q8IYI6 725 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 EMC1Q8N766 993 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 C1orf127Q8N9H9 656 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 TWNKQ96RR1 684 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 C10orf88Q9H8K7 445 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 IFT122Q9HBG6 1241 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 SAYSD1Q9NPB0 183 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 HMGXB4Q9UGU5 601 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.43□□□□□ -0.9
SYNE1-217ENST00000466159 C3orf70A6NLC5 250 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-217ENST00000466159 LACTBL1A8MY62 500 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 CXCL11O14625 94 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 HBP1O60381 514 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 IFNB1P01574 187 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 BRAFP15056 766 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 PECAM1P16284 738 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-217ENST00000466159 ATP5DP30049 168 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 VCPP55072 806 aaKnown RBP9.43□□□□□ -0.9
SYNE1-217ENST00000466159 COPS2P61201 443 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 YWHAEP62258 255 aaKnown RBP9.43□□□□□ -0.9
SYNE1-217ENST00000466159 TAP1Q03518 808 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 TTLL12Q14166 644 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-217ENST00000466159 OASLQ15646 514 aaKnown RBP9.43□□□□□ -0.9
SYNE1-217ENST00000466159 ZNF667Q5HYK9 610 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 SRRM1Q8IYB3 904 aaKnown RBP9.43□□□□□ -0.9
SYNE1-217ENST00000466159 NIPA2Q8N8Q9 360 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 GDAP1Q8TB36 358 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 CPXM1Q96SM3 734 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 SMYD3Q9H7B4 428 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 TNFSF13BQ9Y275 285 aa9.43□□□□□ -0.9
SYNE1-217ENST00000466159 SPDYE5A6NIY4 337 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 SIGLEC16A6NMB1 481 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 TCP11X1B4DZS4 312 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 SGK1O00141 431 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 CDH16O75309 829 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 LRCH4O75427 683 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 ITGB3P05106 788 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 STAG3L1P0CL83 205 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 PSMC1P62191 440 aaKnown RBP9.42□□□□□ -0.9
SYNE1-217ENST00000466159 SLC25A11Q02978 314 aaKnown RBP9.42□□□□□ -0.9
SYNE1-217ENST00000466159 MOGSQ13724 837 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 JADE1Q6IE81 842 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 ANKRD13AQ8IZ07 590 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 CPB2Q96IY4 423 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 BCO2Q9BYV7 579 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 LHX5Q9H2C1 402 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 DDX56Q9NY93 547 aaKnown RBP9.42□□□□□ -0.9
SYNE1-217ENST00000466159 SAMD15Q9P1V8 674 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 STRIP2Q9ULQ0 834 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 TPX2Q9ULW0 747 aaKnown RBP9.42□□□□□ -0.9
SYNE1-217ENST00000466159 DRG1Q9Y295 367 aaKnown RBP9.42□□□□□ -0.9
SYNE1-217ENST00000466159 SBF1O95248 1867 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 A0A087WZ62 844 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 CCT8L1PA6NM43 557 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 C22orf31O95567 290 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 ERBB2P04626 1255 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 CD48P09326 243 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 INSRRP14616 1297 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 POLR2BP30876 1174 aaKnown RBP9.42□□□□□ -0.9
SYNE1-217ENST00000466159 PTPN7P35236 360 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 SCTRP47872 440 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 SLC26A2P50443 739 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 STAT4Q14765 748 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 CAPN12Q6ZSI9 719 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 ANKS4BQ8N8V4 417 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 SLC4A11Q8NBS3 891 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 CCHCR1Q8TD31 782 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 FDXACB1Q9BRP7 624 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-217ENST00000466159 ELOVL4Q9GZR5 314 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 ACTR5Q9H9F9 607 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-217ENST00000466159 METTL5Q9NRN9 209 aaKnown RBP9.42□□□□□ -0.9
SYNE1-217ENST00000466159 FGFR1OP2Q9NVK5 253 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 EURLQ9NYK6 297 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 LGALS13Q9UHV8 139 aa9.42□□□□□ -0.9
SYNE1-217ENST00000466159 GOLGA8MH3BSY2 632 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 MED7O43513 233 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 CST8O60676 142 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 BANF1O75531 89 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 IL18RAPO95256 599 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 ITGAVP06756 1048 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 GCAP28676 217 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 GDF10P55107 478 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 TTLL4Q14679 1199 aa9.41□□□□□ -0.9
SYNE1-217ENST00000466159 TMED2Q15363 201 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms