RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ORC1Q13415 861 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 ZNF667Q5HYK9 610 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 TAX1BP1Q86VP1 789 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 MLXIPLQ9NP71 852 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 SAYSD1Q9NPB0 183 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 PDGFCQ9NRA1 345 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 LGALS13Q9UHV8 139 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 NAALADL1Q9UQQ1 740 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 TNFSF13BQ9Y275 285 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 ATP2C2O75185 946 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 NFICP08651 508 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 KRT3P12035 628 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 VCPP55072 806 aaKnown RBP22.96■■□□□ 1.27
SHMT1-202ENST00000352886 STAT4Q14765 748 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 OASLQ15646 514 aaKnown RBP22.96■■□□□ 1.27
SHMT1-202ENST00000352886 SMTNL2Q2TAL5 461 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 CEP128Q6ZU80 1094 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 JOSD2Q8TAC2 188 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 P3H4Q92791 437 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 TMEM121Q9BTD3 319 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 NSRP1Q9H0G5 558 aaKnown RBP22.96■■□□□ 1.27
SHMT1-202ENST00000352886 RNPEPQ9H4A4 650 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 DRG1Q9Y295 367 aaKnown RBP22.96■■□□□ 1.27
SHMT1-202ENST00000352886 MED7O43513 233 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 IL18RAPO95256 599 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 HNRNPH1P31943 449 aaKnown RBP22.96■■□□□ 1.27
SHMT1-202ENST00000352886 IGBP1P78318 339 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 PLCB3Q01970 1234 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 C1orf127Q8N9H9 656 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 BCO2Q9BYV7 579 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 LHX5Q9H2C1 402 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 ZWILCHQ9H900 591 aa22.96■■□□□ 1.27
SHMT1-202ENST00000352886 TPX2Q9ULW0 747 aaKnown RBP22.96■■□□□ 1.27
SHMT1-202ENST00000352886 GPR25O00155 361 aa22.95■■□□□ 1.26
SHMT1-202ENST00000352886 CSDE1O75534 798 aaKnown RBP22.95■■□□□ 1.26
SHMT1-202ENST00000352886 PECAM1P16284 738 aaPredicted RBP22.95■■□□□ 1.26
SHMT1-202ENST00000352886 RAD23BP54727 409 aa22.95■■□□□ 1.26
SHMT1-202ENST00000352886 ITIH4Q14624 930 aa22.95■■□□□ 1.26
SHMT1-202ENST00000352886 LACTB2Q53H82 288 aaPredicted RBP22.95■■□□□ 1.26
SHMT1-202ENST00000352886 POLNQ7Z5Q5 900 aa22.95■■□□□ 1.26
SHMT1-202ENST00000352886 ANKRD13AQ8IZ07 590 aa22.95■■□□□ 1.26
SHMT1-202ENST00000352886 SDCBP2Q9H190 292 aa22.95■■□□□ 1.26
SHMT1-202ENST00000352886 KDM4CQ9H3R0 1056 aa22.95■■□□□ 1.26
SHMT1-202ENST00000352886 SPDYE5A6NIY4 337 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 SIGLEC16A6NMB1 481 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 PSMC4P43686 418 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 PSMC1P62191 440 aaKnown RBP22.94■■□□□ 1.26
SHMT1-202ENST00000352886 MPP2Q14168 576 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 SRRM1Q8IYB3 904 aaKnown RBP22.94■■□□□ 1.26
SHMT1-202ENST00000352886 NKD2Q969F2 451 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-202ENST00000352886 CPXM1Q96SM3 734 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 C3orf70A6NLC5 250 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-202ENST00000352886 CCT8L1PA6NM43 557 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 SGK1O00141 431 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 LRCH4O75427 683 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 ITGBL1O95965 494 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-202ENST00000352886 ITGAVP06756 1048 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 ABHD2P08910 425 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 SCTRP47872 440 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 DYNLT1P63172 113 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 SLC25A11Q02978 314 aaKnown RBP22.94■■□□□ 1.26
SHMT1-202ENST00000352886 KCNT1Q5JUK3 1230 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 ARFGAP1Q8N6T3 406 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 CFAP57Q96MR6 1250 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 PPP1R16BQ96T49 567 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 SMYD3Q9H7B4 428 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 IFT122Q9HBG6 1241 aa22.94■■□□□ 1.26
SHMT1-202ENST00000352886 SAE1Q9UBE0 346 aaPredicted RBP22.94■■□□□ 1.26
SHMT1-202ENST00000352886 DYNC1LI1Q9Y6G9 523 aaKnown RBP22.94■■□□□ 1.26
SHMT1-202ENST00000352886 TCP11X1B4DZS4 312 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 C22orf31O95567 290 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 GH1P01241 217 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 IFNB1P01574 187 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 ITGB3P05106 788 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 IL1R2P27930 398 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 ADCY1Q08828 1119 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 TTLL4Q14679 1199 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 HP1BP3Q5SSJ5 553 aaPredicted RBP22.93■■□□□ 1.26
SHMT1-202ENST00000352886 TWNKQ96RR1 684 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 SYNCQ9H7C4 482 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 ERAP1Q9NZ08 941 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 HMGXB4Q9UGU5 601 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 LACTBL1A8MY62 500 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 STAG3L1P0CL83 205 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 TTLL12Q14166 644 aaPredicted RBP22.93■■□□□ 1.26
SHMT1-202ENST00000352886 FASTKD3Q14CZ7 662 aaKnown RBP22.93■■□□□ 1.26
SHMT1-202ENST00000352886 JADE1Q6IE81 842 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 KIAA0319LQ8IZA0 1049 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 EMC1Q8N766 993 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 GDAP1Q8TB36 358 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 PRMT7Q9NVM4 692 aaPredicted RBP22.93■■□□□ 1.26
SHMT1-202ENST00000352886 EURLQ9NYK6 297 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 KCNH4Q9UQ05 1017 aa22.93■■□□□ 1.26
SHMT1-202ENST00000352886 MORF4L2Q15014 288 aa22.92■■□□□ 1.26
SHMT1-202ENST00000352886 TMED2Q15363 201 aa22.92■■□□□ 1.26
SHMT1-202ENST00000352886 SLC35B2Q8TB61 432 aa22.92■■□□□ 1.26
SHMT1-202ENST00000352886 METTL5Q9NRN9 209 aaKnown RBP22.92■■□□□ 1.26
SHMT1-202ENST00000352886 FGFR1OP2Q9NVK5 253 aa22.92■■□□□ 1.26
SHMT1-202ENST00000352886 EXOC1LA0A1B0GW35 172 aa22.92■■□□□ 1.26
SHMT1-202ENST00000352886 ERBB2P04626 1255 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms