RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 SLCO1B3Q9NPD5 702 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 NOP56O00567 594 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 STAM2O75886 525 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 DNAJC8O75937 253 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 FARP2O94887 1054 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 ALDH5A1P51649 535 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 STAT4Q14765 748 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 EFTUD2Q15029 972 aaKnown RBP eCLIP13.63□□□□□ -0.238e-7■■■■□ 19.8
CCDC88A-214ENST00000621814 DUOXA2Q1HG44 320 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 TMEM63BQ5T3F8 832 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 ZCCHC9Q8N567 271 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 HSPH1Q92598 858 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 PRCCQ92733 491 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 KLHL29Q96CT2 875 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 VCPIP1Q96JH7 1222 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 C12orf65Q9H3J6 166 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 CCDC134Q9H6E4 229 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 SLC12A4Q9UP95 1085 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 L3MBTL1Q9Y468 752 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 CEP83Q9Y592 693 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 A0A1W2PPM1 405 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 C19orf81C9J6K1 198 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 IGF2BP3O00425 579 aaKnown RBP eCLIP13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 DNALI1O14645 258 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 ASS1P00966 412 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 PRKCBP05771 671 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 CALB1P05937 261 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 CD48P09326 243 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 CA4P22748 312 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 SSTR1P30872 391 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 OAZ1P54368 228 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 GDF10P55107 478 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 LAMTOR4Q0VGL1 99 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 HSDL1Q3SXM5 330 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 TFDP3Q5H9I0 405 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 GADL1Q6ZQY3 521 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 TMEM192Q8IY95 271 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 JOSD2Q8TAC2 188 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 P3H4Q92791 437 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 MRPL4Q9BYD3 311 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 KLHL14Q9P2G3 628 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 ADGRA2Q96PE1 1338 aa13.63□□□□□ -0.23
CCDC88A-214ENST00000621814 FAM47DPA6NHR8 397 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 A8MUI8 341 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 CST8O60676 142 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 TOM1L1O75674 476 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 ATP6V1G2O95670 118 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 KRT3P12035 628 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 LMNB2Q03252 620 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 TAF5Q15542 800 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 MAPK6Q16659 721 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 EAPPQ56P03 285 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 CCDC91Q7Z6B0 441 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 KLRG1Q96E93 195 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 CALN1Q9BXU9 219 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 TRABDQ9H4I3 376 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 NOD2Q9HC29 1040 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 ALG13Q9NP73 1137 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 BTBD7Q9P203 1132 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 KCNG1Q9UIX4 513 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 KIAA1217Q5T5P2 1943 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 RPA3P35244 121 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 MAP2K2P36507 400 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 WDR4P57081 412 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 MCCD1P59942 119 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 PSMC1P62191 440 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 IL9RQ01113 521 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 ALLCQ8N6M5 410 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 ACTL9Q8TC94 416 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 NIF3L1Q9GZT8 377 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 VPS33BQ9H267 617 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 ADAMTS5Q9UNA0 930 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 ARL2BPQ9Y2Y0 163 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 MAP3K6O95382 1288 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 OTUD4Q01804 1114 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 SGSM1Q2NKQ1 1148 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 SWT1Q5T5J6 900 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 BRSK2Q8IWQ3 736 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 LRRN4Q8WUT4 740 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 RSAD2Q8WXG1 361 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 SMC6Q96SB8 1091 aa13.62□□□□□ -0.23
CCDC88A-214ENST00000621814 hCG_1818297A0A087WSY0 165 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 MSCO60682 206 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 GRAP2O75791 330 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 CXCL8P10145 99 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 IL1R2P27930 398 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 BASP1P80723 227 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 ANKRD22Q5VYY1 191 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 CGB2Q6NT52 195 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 WDR49Q8IV35 697 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 KCTD6Q8NC69 237 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 ATP2A1O14983 1001 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 TAC1P20366 129 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 RPS12P25398 132 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 CDKN2BP42772 138 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 CTCFP49711 727 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 CLCN3P51790 818 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 NCALDP61601 193 aa13.61□□□□□ -0.23
CCDC88A-214ENST00000621814 TFDP1Q14186 410 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms