RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 C2CD2LO14523 706 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 CLGNO14967 610 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 ZNF263O14978 683 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 PJA2O43164 708 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 TADA2AO75478 443 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 PYGMP11217 842 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 COILP38432 576 aaPredicted RBP11.75□□□□□ -0.53
PTPRF-204ENST00000412568 CELF3Q5SZQ8 465 aaKnown RBP11.75□□□□□ -0.53
PTPRF-204ENST00000412568 C4orf33Q8N1A6 199 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 SLC7A14Q8TBB6 771 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 EPS8L1Q8TE68 723 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 SKA2Q8WVK7 121 aaPredicted RBP11.75□□□□□ -0.53
PTPRF-204ENST00000412568 LENG9Q96B70 501 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 LRP6O75581 1613 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 MYO9BQ13459 2157 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 E2F8A0AVK6 867 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 PHF20L1A8MW92 1017 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 DFFAO00273 331 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 ACKR2O00590 384 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 POMCP01189 267 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 GHRP10912 638 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 ACTN3Q08043 901 aaPredicted RBP11.75□□□□□ -0.53
PTPRF-204ENST00000412568 HIF1AQ16665 826 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 TBC1D1Q86TI0 1168 aaPredicted RBP11.75□□□□□ -0.53
PTPRF-204ENST00000412568 PPP4R1Q8TF05 950 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 DDX56Q9NY93 547 aaKnown RBP11.75□□□□□ -0.53
PTPRF-204ENST00000412568 DCTN4Q9UJW0 460 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 AFG3L2Q9Y4W6 797 aa11.75□□□□□ -0.53
PTPRF-204ENST00000412568 GOLGA8CPA6NN73 597 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 MYBL2P10244 700 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 GZMAP12544 262 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 AMPD2Q01433 879 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 PPIL2Q13356 520 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 DRP2Q13474 957 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 ZBTB41Q5SVQ8 909 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 HYIQ5T013 277 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 AP1ARQ63HQ0 302 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 JADE1Q6IE81 842 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 FAM131BQ86XD5 332 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 LNX1Q8TBB1 728 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-204ENST00000412568 MDM1Q8TC05 714 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 GTF3C2Q8WUA4 911 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-204ENST00000412568 PITPNM3Q9BZ71 974 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 CCDC68Q9H2F9 335 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 C10orf88Q9H8K7 445 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.74□□□□□ -0.532e-6■■□□□ 12.6
PTPRF-204ENST00000412568 TPX2Q9ULW0 747 aaKnown RBP11.74□□□□□ -0.53
PTPRF-204ENST00000412568 CHMP2BQ9UQN3 213 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 NEU2Q9Y3R4 380 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 APOL1O14791 398 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 GSTA1P08263 222 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 GSTA2P09210 222 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 NCAM1P13591 858 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 MARCKSL1P49006 195 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 TAF6P49848 677 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 NDST1P52848 882 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 PTPN11Q06124 597 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-204ENST00000412568 EPM2AIP1Q7L775 607 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-204ENST00000412568 ABRAQ8N0Z2 381 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 GABPB2Q8TAK5 448 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-204ENST00000412568 BHMTQ93088 406 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 GBP5Q96PP8 586 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 VPS11Q9H270 941 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 ZNF214Q9UL59 606 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-204ENST00000412568 ARHGAP42A6NI28 874 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 STRNO43815 780 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 TRPA1O75762 1119 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 SLC26A2P50443 739 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 MAPK7Q13164 816 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 MYBPC2Q14324 1141 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 WDR49Q8IV35 697 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 ACTRT1Q8TDG2 376 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 SEMA4DQ92854 862 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 EXT2Q93063 718 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 LENG1Q96BZ8 264 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-204ENST00000412568 CHMP6Q96FZ7 201 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 TINF2Q9BSI4 451 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 TMEM121Q9BTD3 319 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 ABI2Q9NYB9 513 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-204ENST00000412568 WDR35Q9P2L0 1181 aa11.74□□□□□ -0.53
PTPRF-204ENST00000412568 A0A0G2JND7 137 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 CCDC195A0A1B0GUA6 201 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 MAP2K7O14733 419 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 BAG2O95816 211 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 CD4P01730 458 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 MAPTP10636 758 aaKnown RBP11.73□□□□□ -0.53
PTPRF-204ENST00000412568 KITP10721 976 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 RASSF2P50749 326 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 ATP13A4Q4VNC1 1196 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 IRF2BP2Q7Z5L9 587 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 MYLK4Q86YV6 388 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-204ENST00000412568 MCOLN2Q8IZK6 566 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 URGCPQ8TCY9 931 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 EPN3Q9H201 632 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 KIF9Q9HAQ2 790 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 GPD1P21695 349 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 DEUP1Q05D60 604 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 CLEC16AQ2KHT3 1053 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 RASIP1Q5U651 963 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 TDRD10Q5VZ19 366 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms