RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 NAA35Q5VZE5 725 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 PPP1R2P3Q6NXS1 205 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 KIAA0319LQ8IZA0 1049 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 MCOLN2Q8IZK6 566 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 UBL4BQ8N7F7 174 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 PPP1R13LQ8WUF5 828 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 AVENQ9NQS1 362 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-212ENST00000540304 FLRT1Q9NZU1 646 aa10.28□□□□□ -0.76
CLIP1-212ENST00000540304 ERLIN2O94905 339 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 F2P00734 622 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 ZNF865P0CJ78 1059 aaPredicted RBP10.27□□□□□ -0.76
CLIP1-212ENST00000540304 STAG3L1P0CL83 205 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 ARF4P18085 180 aaPredicted RBP10.27□□□□□ -0.76
CLIP1-212ENST00000540304 COMTP21964 271 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 CLUL1Q15846 466 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 ZNF699Q32M78 642 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 C17orf99Q6UX52 265 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 SAPCD2Q86UD0 394 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 IFNL1Q8IU54 200 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 KLHL7Q8IXQ5 586 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 TMEM192Q8IY95 271 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 CPA5Q8WXQ8 436 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 USP6NLQ92738 828 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 CPB2Q96IY4 423 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 ZSWIM1Q9BR11 485 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 WNT8AQ9H1J5 351 aa10.27□□□□□ -0.76
CLIP1-212ENST00000540304 KRIT1O00522 736 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 THAP12O43422 761 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 TSPAN1O60635 241 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 SSTR3P32745 418 aaPredicted RBP10.27□□□□□ -0.77
CLIP1-212ENST00000540304 NOMO3P69849 1222 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 CCDC15Q0P6D6 951 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 GRIK3Q13003 919 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 TLK2Q86UE8 772 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 IFT20Q8IY31 132 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 TMEM130Q8N3G9 435 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 GIMAP7Q8NHV1 300 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 AENQ8WTP8 325 aaKnown RBP10.27□□□□□ -0.77
CLIP1-212ENST00000540304 CYFIP2Q96F07 1278 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 RNPC3Q96LT9 517 aaKnown RBP10.27□□□□□ -0.77
CLIP1-212ENST00000540304 NAP1L3Q99457 506 aaPredicted RBP10.27□□□□□ -0.77
CLIP1-212ENST00000540304 AP1M1Q9BXS5 423 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 UBXN6Q9BZV1 441 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 XYLT2Q9H1B5 865 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 SETD4Q9NVD3 440 aa10.27□□□□□ -0.77
CLIP1-212ENST00000540304 CHCHD3Q9NX63 227 aaKnown RBP10.27□□□□□ -0.77
CLIP1-212ENST00000540304 LACTBL1A8MY62 500 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 ANKRD65E5RJM6 399 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 HEXIM1O94992 359 aaKnown RBP10.26□□□□□ -0.77
CLIP1-212ENST00000540304 FGGP02679 453 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 NFICP08651 508 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 SLC10A3P09131 477 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 SMIM10L2AP0DMW4 78 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 SMIM10L2BP0DMW5 78 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 RGS2P41220 211 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 GPS2Q13227 327 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 SMC1AQ14683 1233 aaKnown RBP10.26□□□□□ -0.77
CLIP1-212ENST00000540304 OLFML2BQ68BL8 750 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 MON1BQ7L1V2 547 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 PHC3Q8NDX5 983 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 SOCS4Q8WXH5 440 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 ALG3Q92685 438 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 ACBD3Q9H3P7 528 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 ASB7Q9H672 318 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 VIPAS39Q9H9C1 493 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 GDF3Q9NR23 364 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 CISHQ9NSE2 258 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 LMCD1Q9NZU5 365 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 NRCAMQ92823 1304 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 A0A1B0GUA9 196 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 ZSCAN5CA6NGD5 496 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-212ENST00000540304 RAD51CO43502 376 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 SPOPO43791 374 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 GLI1P08151 1106 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 CD58P19256 250 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 CYP2B6P20813 491 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 RRM1P23921 792 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 CTNNA2P26232 953 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 ASPAP45381 313 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 YWHAEP62258 255 aaKnown RBP10.26□□□□□ -0.77
CLIP1-212ENST00000540304 CDC42EP1Q00587 391 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 JADE1Q6IE81 842 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 PHF13Q86YI8 300 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-212ENST00000540304 PASD1Q8IV76 773 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 ZNF606Q8WXB4 792 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 KRT35Q92764 455 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 CD101Q93033 1021 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 VCPIP1Q96JH7 1222 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 BTBD6Q96KE9 485 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 APBA2Q99767 749 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 ADPGKQ9BRR6 497 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 TMEM165Q9HC07 324 aa10.26□□□□□ -0.77
CLIP1-212ENST00000540304 MEFVO15553 781 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-212ENST00000540304 CPP00450 1065 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 CFHP08603 1231 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 KRT19P08727 400 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 NEFHP12036 1026 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 ELF1P32519 619 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 CTNNA1P35221 906 aaKnown RBP10.25□□□□□ -0.77
CLIP1-212ENST00000540304 CPT1AP50416 773 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms