RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 RGS17Q9UGC6 210 aaPredicted RBP5.6□□□□□ -1.51
CD44-220ENST00000525688 AFF4Q9UHB7 1163 aaKnown RBP5.6□□□□□ -1.51
CD44-220ENST00000525688 OAZ3Q9UMX2 235 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 KAT6BQ8WYB5 2073 aa5.6□□□□□ -1.51
CD44-220ENST00000525688 RAPGEF6Q8TEU7 1601 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 ATP10BO94823 1461 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 NUP153P49790 1475 aaKnown RBP5.59□□□□□ -1.51
CD44-220ENST00000525688 PNPLA7Q6ZV29 1317 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 A0A1W2PRX2 142 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 NUAK1O60285 661 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 FGF18O76093 207 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 AMHP03971 560 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 ANXA1P04083 346 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 THP07101 528 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 GNAI3P08754 354 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 ALAS1P13196 640 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 TSHRP16473 764 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 STT3AP46977 705 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 EPHB4P54760 987 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 PPP2CBP62714 309 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 GNAI1P63096 354 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 PPP2CAP67775 309 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 EXOSC9Q06265 439 aaKnown RBP5.59□□□□□ -1.51
CD44-220ENST00000525688 STK3Q13188 491 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 DUSP8Q13202 625 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 SURF1Q15526 300 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 ALFQ53S48 1182 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 FAM209BQ5JX69 171 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 FAM111BQ6SJ93 734 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 ZNF365Q70YC5 407 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 SMAP1Q8IYB5 467 aaPredicted RBP5.59□□□□□ -1.51
CD44-220ENST00000525688 CCDC89Q8N998 374 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 OR6B3Q8NGW1 331 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 TNPO1Q92973 898 aaKnown RBP5.59□□□□□ -1.51
CD44-220ENST00000525688 ARL8AQ96BM9 186 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 P2RX7Q99572 595 aaKnown RBP5.59□□□□□ -1.51
CD44-220ENST00000525688 PACSIN1Q9BY11 444 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 WDR12Q9GZL7 423 aaKnown RBP5.59□□□□□ -1.51
CD44-220ENST00000525688 ADAM7Q9H2U9 754 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 COL20A1Q9P218 1284 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 RNF114Q9Y508 228 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 PAXBP1Q9Y5B6 917 aa5.59□□□□□ -1.51
CD44-220ENST00000525688 GLI2P10070 1586 aa5.59□□□□□ -1.52
CD44-220ENST00000525688 TCRBV7S2A1N4TA0A589 114 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 BICDL2A1A5D9 508 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 TRIM43BA6NCK2 446 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 POM121BA6NF01 834 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 F8W8V4 182 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 RNASEH2AO75792 299 aaKnown RBP5.58□□□□□ -1.52
CD44-220ENST00000525688 HAUS5O94927 633 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 ABHD16AO95870 558 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 SLC6A4P31645 630 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 RPS19P39019 145 aaKnown RBP5.58□□□□□ -1.52
CD44-220ENST00000525688 HTRA4P83105 476 aaPredicted RBP5.58□□□□□ -1.52
CD44-220ENST00000525688 HABP2Q14520 560 aaPredicted RBP5.58□□□□□ -1.52
CD44-220ENST00000525688 UBXN2BQ14CS0 331 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 METTL24Q5JXM2 366 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 ANKS6Q68DC2 871 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 MFSD5Q6N075 450 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 ZNF529Q6P280 563 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 ZNF783Q6ZMS7 281 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 ARHGEF18Q6ZSZ5 1173 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 NGDNQ8NEJ9 315 aaKnown RBP5.58□□□□□ -1.52
CD44-220ENST00000525688 VPS37AQ8NEZ2 397 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 OR10H5Q8NGA6 315 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 SNRNP27Q8WVK2 155 aaKnown RBP5.58□□□□□ -1.52
CD44-220ENST00000525688 TRIM43Q96BQ3 446 aaPredicted RBP5.58□□□□□ -1.52
CD44-220ENST00000525688 ZNF512Q96ME7 567 aaPredicted RBP5.58□□□□□ -1.52
CD44-220ENST00000525688 DPYSL5Q9BPU6 564 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 BRIP1Q9BX63 1249 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 C12orf65Q9H3J6 166 aaKnown RBP5.58□□□□□ -1.52
CD44-220ENST00000525688 BRD9Q9H8M2 597 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 SMURF2Q9HAU4 748 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 GPR35Q9HC97 309 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.58□□□□□ -1.52
CD44-220ENST00000525688 EPRSP07814 1512 aaKnown RBP5.58□□□□□ -1.52
CD44-220ENST00000525688 WDR7Q9Y4E6 1490 aa5.58□□□□□ -1.52
CD44-220ENST00000525688 FMN1Q68DA7 1419 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 PRRT4C9JH25 899 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 BTN3A1O00481 513 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 KIAA0391O15091 583 aaKnown RBP5.57□□□□□ -1.52
CD44-220ENST00000525688 NCK2O43639 380 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 CDC14BO60729 498 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 STC2O76061 302 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 POMCP01189 267 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 GJB1P08034 283 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 INHBBP09529 407 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 PARP1P09874 1014 aaKnown RBP5.57□□□□□ -1.52
CD44-220ENST00000525688 RARBP10826 455 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 CIAPIN1Q6FI81 312 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 DRICH1Q6PGQ1 229 aaPredicted RBP5.57□□□□□ -1.52
CD44-220ENST00000525688 FAM83AQ86UY5 434 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 SKAP1Q86WV1 359 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 MYLK4Q86YV6 388 aaPredicted RBP5.57□□□□□ -1.52
CD44-220ENST00000525688 MAML1Q92585 1016 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 DDX17Q92841 729 aaKnown RBP5.57□□□□□ -1.52
CD44-220ENST00000525688 LMF1Q96S06 567 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 LSM14BQ9BX40 385 aaKnown RBP5.57□□□□□ -1.52
CD44-220ENST00000525688 ZNF518BQ9C0D4 1074 aa5.57□□□□□ -1.52
CD44-220ENST00000525688 VPS11Q9H270 941 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms