RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 PON1P27169 355 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 RFC5P40937 340 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 GALCP54803 685 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 JAM2P57087 298 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 HERC4Q5GLZ8 1057 aaPredicted RBP11.81□□□□□ -0.52
CUX1-204ENST00000393824 MORN1Q5T089 497 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 CYFIP1Q7L576 1253 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 MGARPQ8TDB4 240 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 MAML3Q96JK9 1138 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 ZNF333Q96JL9 665 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 TGS1Q96RS0 853 aaKnown RBP11.81□□□□□ -0.52
CUX1-204ENST00000393824 RIT2Q99578 217 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 KATNBL1Q9H079 304 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 DCLRE1BQ9H816 532 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 NCANO14594 1321 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 NPHP3-ACAD11A0A0J9YXS1 232 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 PDXKO00764 312 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 ECEL1O95672 775 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 ACTN1P12814 892 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 CREB1P16220 341 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 COPB2P35606 906 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 CACNB1Q02641 598 aaPredicted RBP11.81□□□□□ -0.52
CUX1-204ENST00000393824 SETDB1Q15047 1291 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 SPDYAQ5MJ70 313 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 PRAMEF19Q5SWL8 479 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 SLC30A5Q8TAD4 765 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 UHMK1Q8TAS1 419 aaKnown RBP11.81□□□□□ -0.52
CUX1-204ENST00000393824 RFFLQ8WZ73 363 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 ART4Q93070 314 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 TEKT3Q9BXF9 490 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 PCMTD2Q9NV79 361 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 SCOCQ9UIL1 159 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 GJD2Q9UKL4 321 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 BLOC1S6Q9UL45 172 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 STK24Q9Y6E0 443 aa11.81□□□□□ -0.52
CUX1-204ENST00000393824 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.8□□□□□ -0.52
CUX1-204ENST00000393824 STRNO43815 780 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 CALUO43852 315 aaPredicted RBP11.8□□□□□ -0.52
CUX1-204ENST00000393824 TMEM253P0C7T8 217 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 MYBL1P10243 752 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 CYP2B6P20813 491 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 RPA1P27694 616 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 MAPK4P31152 587 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 RASSF2P50749 326 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 POLGP54098 1239 aaPredicted RBP11.8□□□□□ -0.52
CUX1-204ENST00000393824 PRPF4BQ13523 1007 aaKnown RBP11.8□□□□□ -0.52
CUX1-204ENST00000393824 MPP2Q14168 576 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 EPHA7Q15375 998 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 XRRA1Q6P2D8 792 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 DPP9Q86TI2 863 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 TPH2Q8IWU9 490 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 SLC35G2Q8TBE7 412 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 SLC7A6OSQ96CW6 309 aaPredicted RBP11.8□□□□□ -0.52
CUX1-204ENST00000393824 PLEKHG4BQ96PX9 1271 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 DDX23Q9BUQ8 820 aaKnown RBP11.8□□□□□ -0.52
CUX1-204ENST00000393824 TBC1D10AQ9BXI6 508 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 MYLK2Q9H1R3 596 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 OSGEPQ9NPF4 335 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 STOML1Q9UBI4 398 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 XRCC5P13010 732 aaKnown RBP11.8□□□□□ -0.52
CUX1-204ENST00000393824 CYP11B2P19099 503 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 NR2F2P24468 414 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 CTNNA2P26232 953 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 RPL13P26373 211 aaKnown RBP11.8□□□□□ -0.52
CUX1-204ENST00000393824 RANBP1P43487 201 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 OCRLQ01968 901 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 KNOP1Q1ED39 458 aaKnown RBP11.8□□□□□ -0.52
CUX1-204ENST00000393824 LRRC23Q53EV4 343 aaPredicted RBP11.8□□□□□ -0.52
CUX1-204ENST00000393824 FOXB2Q5VYV0 432 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 MAMDC4Q6UXC1 1216 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 ARHGEF18Q6ZSZ5 1173 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 INTS8Q75QN2 995 aaKnown RBP11.8□□□□□ -0.52
CUX1-204ENST00000393824 GPBP1Q86WP2 473 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 VSIG1Q86XK7 387 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 NELFCDQ8IXH7 590 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 ABRAQ8N0Z2 381 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 PRELID2Q8N945 189 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 MORC4Q8TE76 937 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 USP6NLQ92738 828 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 LENG1Q96BZ8 264 aaPredicted RBP11.8□□□□□ -0.52
CUX1-204ENST00000393824 C18orf8Q96DM3 657 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 LXNQ9BS40 222 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 FAM192AQ9GZU8 254 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 TLE6Q9H808 572 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 DMAP1Q9NPF5 467 aaPredicted RBP11.8□□□□□ -0.52
CUX1-204ENST00000393824 RNF186Q9NXI6 227 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 GABRQQ9UN88 632 aa11.8□□□□□ -0.52
CUX1-204ENST00000393824 A0A1B0GVG6 124 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 NVLO15381 856 aaKnown RBP11.79□□□□□ -0.52
CUX1-204ENST00000393824 ZSCAN9O15535 394 aaPredicted RBP11.79□□□□□ -0.52
CUX1-204ENST00000393824 TCEA3O75764 348 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 TAC1P20366 129 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 STX2P32856 288 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 VHLP40337 213 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 PSMC4P43686 418 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 CD151P48509 253 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 POLE2P56282 527 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 RNASELQ05823 741 aaKnown RBP11.79□□□□□ -0.52
CUX1-204ENST00000393824 LONRF1Q17RB8 773 aa11.79□□□□□ -0.52
CUX1-204ENST00000393824 BMT2Q1RMZ1 405 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms