RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 APBB2Q92870 758 aa19.89■□□□□ 0.77
CLN3-206ENST00000360019 MMS19Q96T76 1030 aa19.89■□□□□ 0.77
CLN3-206ENST00000360019 SEPT11Q9NVA2 429 aaKnown RBP19.89■□□□□ 0.77
CLN3-206ENST00000360019 SNX9Q9Y5X1 595 aa19.89■□□□□ 0.77
CLN3-206ENST00000360019 DUSP10Q9Y6W6 482 aa19.89■□□□□ 0.77
CLN3-206ENST00000360019 ENPP3O14638 875 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 INPPL1O15357 1258 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 POMCP01189 267 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 TNNT1P13805 278 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 GNA15P30679 374 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 YWHAEP62258 255 aaKnown RBP19.88■□□□□ 0.77
CLN3-206ENST00000360019 WHAMMQ8TF30 809 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 ZNF560Q96MR9 790 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 TAS2R14Q9NYV8 317 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 HMGXB4Q9UGU5 601 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 INPP5FQ9Y2H2 1132 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 PJA2O43164 708 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 PARNO95453 639 aaKnown RBP19.88■□□□□ 0.77
CLN3-206ENST00000360019 IGFBP6P24592 240 aaPredicted RBP19.88■□□□□ 0.77
CLN3-206ENST00000360019 PNPLA4P41247 253 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 KIF5AQ12840 1032 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 CLLU1OSQ5K130 101 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 C10orf76Q5T2E6 689 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 SMYD5Q6GMV2 418 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 ZNF677Q86XU0 584 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 TWNKQ96RR1 684 aa19.88■□□□□ 0.77
CLN3-206ENST00000360019 TMCO5BA8MYB1 307 aa19.87■□□□□ 0.77
CLN3-206ENST00000360019 KPNA7A9QM74 516 aa19.87■□□□□ 0.77
CLN3-206ENST00000360019 CILPO75339 1184 aa19.87■□□□□ 0.77
CLN3-206ENST00000360019 CAPN2P17655 700 aa19.87■□□□□ 0.77
CLN3-206ENST00000360019 TAF6P49848 677 aa19.87■□□□□ 0.77
CLN3-206ENST00000360019 INCA1Q0VD86 236 aa19.87■□□□□ 0.77
CLN3-206ENST00000360019 VWCEQ96DN2 955 aa19.87■□□□□ 0.77
CLN3-206ENST00000360019 LUC7LQ9NQ29 371 aaKnown RBP19.87■□□□□ 0.77
CLN3-206ENST00000360019 GUCA1BQ9UMX6 200 aa19.87■□□□□ 0.77
CLN3-206ENST00000360019 FAM170AA1A519 330 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 CASTOR2A6NHX0 329 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 KRT86O43790 486 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 CFHP08603 1231 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 FGFR1P11362 822 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 CLCNKBP51801 687 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 LILRA4P59901 499 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 GRIK3Q13003 919 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 DEFB128Q7Z7B8 93 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 ZSWIM1Q9BR11 485 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 PAAF1Q9BRP4 392 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 TSGA10Q9BZW7 698 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 TMEM161AQ9NX61 479 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 GDAP2Q9NXN4 497 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 PODXLO00592 558 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 FANCGO15287 622 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 ITGB8P26012 769 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 RAD23BP54727 409 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 ETF1P62495 437 aaKnown RBP19.86■□□□□ 0.77
CLN3-206ENST00000360019 ORC1Q13415 861 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 SOWAHAQ2M3V2 549 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 SV2CQ496J9 727 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 GLB1LQ6UWU2 654 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 FAM43BQ6ZT52 329 aaPredicted RBP19.86■□□□□ 0.77
CLN3-206ENST00000360019 C3orf58Q8NDZ4 430 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 MRPL45Q9BRJ2 306 aaKnown RBP19.86■□□□□ 0.77
CLN3-206ENST00000360019 ELOVL4Q9GZR5 314 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 FAM124BQ9H5Z6 455 aaPredicted RBP19.86■□□□□ 0.77
CLN3-206ENST00000360019 ELAC1Q9H777 363 aaKnown RBP19.86■□□□□ 0.77
CLN3-206ENST00000360019 SALL4Q9UJQ4 1053 aa19.86■□□□□ 0.77
CLN3-206ENST00000360019 BARX2Q9UMQ3 279 aaPredicted RBP19.86■□□□□ 0.77
CLN3-206ENST00000360019 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.86■□□□□ 0.77
CLN3-206ENST00000360019 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.85■□□□□ 0.77
CLN3-206ENST00000360019 TRIM43BA6NCK2 446 aa19.85■□□□□ 0.77
CLN3-206ENST00000360019 THAP12O43422 761 aa19.85■□□□□ 0.77
CLN3-206ENST00000360019 NDST1P52848 882 aa19.85■□□□□ 0.77
CLN3-206ENST00000360019 UBE2Q1Q7Z7E8 422 aa19.85■□□□□ 0.77
CLN3-206ENST00000360019 SLC4A11Q8NBS3 891 aa19.85■□□□□ 0.77
CLN3-206ENST00000360019 ZNF606Q8WXB4 792 aa19.85■□□□□ 0.77
CLN3-206ENST00000360019 TFAP2BQ92481 460 aa19.85■□□□□ 0.77
CLN3-206ENST00000360019 TRIM43Q96BQ3 446 aaPredicted RBP19.85■□□□□ 0.77
CLN3-206ENST00000360019 ISCUQ9H1K1 167 aa19.85■□□□□ 0.77
CLN3-206ENST00000360019 PUF60Q9UHX1 559 aaKnown RBP19.85■□□□□ 0.77
CLN3-206ENST00000360019 TDRD15B5MCY1 1934 aaKnown RBP19.85■□□□□ 0.77
CLN3-206ENST00000360019 ATP8B3O60423 1300 aa19.85■□□□□ 0.77
CLN3-206ENST00000360019 MACROD2A1Z1Q3 448 aa19.84■□□□□ 0.77
CLN3-206ENST00000360019 EN2P19622 333 aaPredicted RBP19.84■□□□□ 0.77
CLN3-206ENST00000360019 BRD2P25440 801 aaKnown RBP19.84■□□□□ 0.77
CLN3-206ENST00000360019 GALCP54803 685 aa19.84■□□□□ 0.77
CLN3-206ENST00000360019 GNG11P61952 73 aa19.84■□□□□ 0.77
CLN3-206ENST00000360019 UPP1Q16831 310 aa19.84■□□□□ 0.77
CLN3-206ENST00000360019 DNTTIP2Q5QJE6 756 aaKnown RBP19.84■□□□□ 0.77
CLN3-206ENST00000360019 SYT10Q6XYQ8 523 aa19.84■□□□□ 0.77
CLN3-206ENST00000360019 LIMS2Q7Z4I7 341 aa19.84■□□□□ 0.77
CLN3-206ENST00000360019 CRIPAKQ8N1N5 446 aa19.84■□□□□ 0.77
CLN3-206ENST00000360019 TXLNBQ8N3L3 684 aa19.84■□□□□ 0.77
CLN3-206ENST00000360019 RABGGTAQ92696 567 aa19.84■□□□□ 0.77
CLN3-206ENST00000360019 PAXBP1Q9Y5B6 917 aa19.84■□□□□ 0.77
CLN3-206ENST00000360019 NME7Q9Y5B8 376 aa19.84■□□□□ 0.77
CLN3-206ENST00000360019 KIF2AO00139 706 aaPredicted RBP19.83■□□□□ 0.77
CLN3-206ENST00000360019 KIF5CO60282 957 aa19.83■□□□□ 0.77
CLN3-206ENST00000360019 H2AFZP0C0S5 128 aa19.83■□□□□ 0.77
CLN3-206ENST00000360019 GZMAP12544 262 aa19.83■□□□□ 0.77
CLN3-206ENST00000360019 UNGP13051 313 aaPredicted RBP19.83■□□□□ 0.77
CLN3-206ENST00000360019 SSTR3P32745 418 aaPredicted RBP19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms