RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TTPALQ9BTX7 342 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 MAGEF1Q9HAY2 307 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 DDX20Q9UHI6 824 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 RNF24Q9Y225 148 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 RUVBL1Q9Y265 456 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 AXIN2Q9Y2T1 843 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 POMT1Q9Y6A1 747 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CACNB4O00305 520 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 NOS1APO75052 506 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CCDC130P13994 396 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 PTNP21246 168 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 MAT2AP31153 395 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CBX5P45973 191 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 BPIFB4P59827 614 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 GPR85P60893 370 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 GALNT3Q14435 633 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 MVPQ14764 893 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF804AQ7Z570 1209 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CDH26Q8IXH8 852 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 OR8H1Q8NGG4 311 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 PFDN5Q99471 154 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ZSCAN16Q9H4T2 348 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CCDC162PA2VCL2 907 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 PNPP00491 289 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SSRP1Q08945 709 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 MSLNQ13421 630 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CTC1Q2NKJ3 1217 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TWISTNBQ3B726 338 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SLC30A6Q6NXT4 461 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 NPAS4Q8IUM7 802 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 NAXEQ8NCW5 288 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 HERVK_113Q902F9 699 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 PHKBQ93100 1093 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 C12orf49Q9H741 205 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TRPM5Q9NZQ8 1165 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TRIM10Q9UDY6 481 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 C3orf18Q9UK00 162 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TNFRSF10AO00220 468 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CCNT1O60563 726 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 POU2F2P09086 479 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SRGAP2BP0DMP2 458 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ARHGDIAP52565 204 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 MRPL12P52815 198 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ERAP2Q6P179 960 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CYP26C1Q6V0L0 522 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 FAM160B2Q86V87 743 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 PALB2Q86YC2 1186 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ZGPATQ8N5A5 531 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 EFHBQ8N7U6 833 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 VPS33AQ96AX1 596 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TUBGCP3Q96CW5 907 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 RRNAD1Q96FB5 475 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 PPP1R2P1Q96PQ5 205 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 FERMT1Q9BQL6 677 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 NIFKQ9BYG3 293 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TAB2Q9NYJ8 693 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 HERC5Q9UII4 1024 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 DOPEY2Q9Y3R5 2298 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ANO9A1A5B4 782 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SMIM30A4D0T7 59 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TTKP33981 857 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 RAD52P43351 418 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CBX2Q14781 532 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ANO6Q4KMQ2 910 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 KLHL35Q6PF15 583 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 FBXO33Q7Z6M2 555 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 MAP4K3Q8IVH8 894 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 GALNT12Q8IXK2 581 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 KCNH5Q8NCM2 988 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 OTUD5Q96G74 571 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 EXOGQ9Y2C4 368 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 PHF3Q92576 2039 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 KCNJ18B7U540 433 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 DCLK1O15075 740 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 YKT6O15498 198 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 AKAP10O43572 662 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 CCNDBP1O95273 360 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 NR5A1Q13285 461 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 KCNJ12Q14500 433 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 DPP9Q86TI2 863 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ALDH16A1Q8IZ83 802 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF786Q8N393 782 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SCAIQ8N9R8 606 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 SLC4A11Q8NBS3 891 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 ATP8B4Q8TF62 1192 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 LENG1Q96BZ8 264 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 NDNQ99608 321 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 WWOXQ9NZC7 414 aa3.75□□□□□ -1.81
SCN1A-221ENST00000641996 TRMT6Q9UJA5 497 aaKnown RBP3.75□□□□□ -1.81
SCN1A-221ENST00000641996 INPPL1O15357 1258 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 DAB1O75553 588 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 MOCS2O96007 188 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 CLEC3BP05452 202 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 IARSP41252 1262 aaKnown RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 GALK1P51570 392 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 PKN3Q6P5Z2 889 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 TIPARPQ7Z3E1 657 aaKnown RBP3.74□□□□□ -1.81
SCN1A-221ENST00000641996 AADATQ8N5Z0 425 aa3.74□□□□□ -1.81
SCN1A-221ENST00000641996 OR6C4Q8NGE1 309 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms