RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PRG3Q9Y2Y8 225 aaPredicted RBP16.13■□□□□ 0.17
PTPRF-206ENST00000429895 NR3C2P08235 984 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 TCN1P20061 433 aaPredicted RBP16.13■□□□□ 0.17
PTPRF-206ENST00000429895 SKOR1P84550 965 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 MAP3K10Q02779 954 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 CDC42EP5Q6NZY7 148 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 CHSY1Q86X52 802 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 C4orf33Q8N1A6 199 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 INPP5DQ92835 1189 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 ISCA1Q9BUE6 129 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 ABI2Q9NYB9 513 aaPredicted RBP16.13■□□□□ 0.17
PTPRF-206ENST00000429895 V9GYQ6 96 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 LRG1P02750 347 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 CARSP49589 748 aaKnown RBP16.13■□□□□ 0.17
PTPRF-206ENST00000429895 ZNF543Q08ER8 600 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 ARHGEF26Q96DR7 871 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 KLK14Q9P0G3 267 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 DBR1Q9UK59 544 aaKnown RBP16.13■□□□□ 0.17
PTPRF-206ENST00000429895 CHMP2BQ9UQN3 213 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 HUNKP57058 714 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 CYP4A22Q5TCH4 519 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 TRIM48Q8IWZ4 208 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 CLEC4FQ8N1N0 589 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 PI4K2AQ9BTU6 479 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 SPATA16Q9BXB7 569 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 ZNF556Q9HAH1 456 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 DTNAQ9Y4J8 743 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 CHUKO15111 745 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 MAFGO15525 162 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 MYL2P10916 166 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 NCAM1P13591 858 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 CHRM3P20309 590 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 GUCY1A3Q02108 690 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 PRKCQQ04759 706 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 BTNL9Q6UXG8 535 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 CHMP1BQ7LBR1 199 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 PLEKHA8Q96JA3 519 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 H2AFY2Q9P0M6 372 aaPredicted RBP16.12■□□□□ 0.17
PTPRF-206ENST00000429895 C19orf81C9J6K1 198 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 STAT4Q14765 748 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 DEPDC1Q5TB30 811 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 STRIP1Q5VSL9 837 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 CYGBQ8WWM9 190 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 BRD8Q9H0E9 1235 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 METTL5Q9NRN9 209 aaKnown RBP16.12■□□□□ 0.17
PTPRF-206ENST00000429895 SLC38A7Q9NVC3 462 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 ZNF229Q9UJW7 825 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 GNASQ5JWF2 1037 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 DTX3LQ8TDB6 740 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 PNMA8BQ9ULN7 279 aaPredicted RBP16.12■□□□□ 0.17
PTPRF-206ENST00000429895 H0Y626 953 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 STXBP3O00186 592 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 ADCY3O60266 1144 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 FMO5P49326 533 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 BTKQ06187 659 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 STILQ15468 1287 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 PAWRQ96IZ0 340 aaKnown RBP16.12■□□□□ 0.17
PTPRF-206ENST00000429895 LRRC1Q9BTT6 524 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 NT5C1AQ9BXI3 368 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 CATSPERBQ9H7T0 1116 aa16.12■□□□□ 0.17
PTPRF-206ENST00000429895 DGKIO75912 1065 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 GUCA1CO95843 209 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 RFX3P48380 749 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 TRADDQ15628 312 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 NEK2P51955 445 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 HPCAP84074 193 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 PWP1Q13610 501 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 PAN2Q504Q3 1202 aaKnown RBP16.11■□□□□ 0.17
PTPRF-206ENST00000429895 ARHGAP15Q53QZ3 475 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 CDR2LQ86X02 465 aaPredicted RBP16.11■□□□□ 0.17
PTPRF-206ENST00000429895 FAM129AQ9BZQ8 928 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 PRR12Q9ULL5 1215 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.11■□□□□ 0.17
PTPRF-206ENST00000429895 TIPINQ9BVW5 301 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 SRP72O76094 671 aaKnown RBP16.11■□□□□ 0.17
PTPRF-206ENST00000429895 STX3Q13277 289 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 DGKDQ16760 1214 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 TKFCQ3LXA3 575 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 EPC2Q52LR7 807 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 RABGAP1LQ5R372 815 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 ACSF2Q96CM8 615 aaPredicted RBP16.11■□□□□ 0.17
PTPRF-206ENST00000429895 RBM15Q96T37 977 aaKnown RBP eCLIP16.11■□□□□ 0.17
PTPRF-206ENST00000429895 STK33Q9BYT3 514 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 TMEM39BQ9GZU3 492 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 DDX28Q9NUL7 540 aaKnown RBP16.11■□□□□ 0.17
PTPRF-206ENST00000429895 PSD3Q9NYI0 1048 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 KIAA0391O15091 583 aaKnown RBP16.11■□□□□ 0.17
PTPRF-206ENST00000429895 WDR47O94967 919 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 GMPSP49915 693 aaPredicted RBP16.11■□□□□ 0.17
PTPRF-206ENST00000429895 NCALDP61601 193 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 GPRC5AQ8NFJ5 357 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 LPAR1Q92633 364 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 FBXO2Q9UK22 296 aaPredicted RBP16.11■□□□□ 0.17
PTPRF-206ENST00000429895 NEU2Q9Y3R4 380 aa16.11■□□□□ 0.17
PTPRF-206ENST00000429895 AP3B1O00203 1094 aa16.1■□□□□ 0.17
PTPRF-206ENST00000429895 GALCP54803 685 aa16.1■□□□□ 0.17
PTPRF-206ENST00000429895 GRIN1Q05586 938 aa16.1■□□□□ 0.17
PTPRF-206ENST00000429895 HES6Q96HZ4 224 aa16.1■□□□□ 0.17
PTPRF-206ENST00000429895 C9orf72Q96LT7 481 aa16.1■□□□□ 0.17
PTPRF-206ENST00000429895 PHF2O75151 1096 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms