RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 HSPA6P17066 643 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 ZNF280AP59817 542 aaPredicted RBP4.29□□□□□ -1.72
VPS35-203ENST00000562420 TAP1Q03518 808 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 NOGQ13253 232 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 LY6G5CQ5SRR4 150 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 SLC4A10Q6U841 1118 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 MAPKAPK5Q8IW41 473 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 ULK2Q8IYT8 1036 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 AOPEPQ8N6M6 819 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 JPH3Q8WXH2 748 aaPredicted RBP4.29□□□□□ -1.72
VPS35-203ENST00000562420 C1GALT1C1Q96EU7 318 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 BOD1Q96IK1 185 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 PNKPQ96T60 521 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 MAP3K14Q99558 947 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 SCAND2PQ9GZW5 306 aaPredicted RBP4.29□□□□□ -1.72
VPS35-203ENST00000562420 NRDE2Q9H7Z3 1164 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 METTL14Q9HCE5 456 aaKnown RBP4.29□□□□□ -1.72
VPS35-203ENST00000562420 ZIM2Q9NZV7 527 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 NEU2Q9Y3R4 380 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 USP15Q9Y4E8 981 aaPredicted RBP4.29□□□□□ -1.72
VPS35-203ENST00000562420 CENPJQ9HC77 1338 aaPredicted RBP4.28□□□□□ -1.72
VPS35-203ENST00000562420 A0A1B0GTW7 788 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 TCRBV7S2A1N4TA0A589 114 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 MYADML2A6NDP7 307 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 H3BML4 177 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 KIAA0391O15091 583 aaKnown RBP4.28□□□□□ -1.72
VPS35-203ENST00000562420 NCR1O76036 304 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 ABHD16AO95870 558 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 SLC6A4P31645 630 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 FAM189BP81408 668 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 OCA2Q04671 838 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 SLFN5Q08AF3 891 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 TCF15Q12870 199 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 SNAPC2Q13487 334 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 KHDC1Q4VXA5 237 aaKnown RBP4.28□□□□□ -1.72
VPS35-203ENST00000562420 TIGD2Q4W5G0 525 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 FAM102BQ5T8I3 360 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 UBE3BQ7Z3V4 1068 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 CATIPQ7Z7H3 387 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 FAM90A1Q86YD7 464 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 TCEAL8Q8IYN2 117 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 CDK5RAP3Q96JB5 506 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 GSTO2Q9H4Y5 243 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 ZNF768Q9H5H4 540 aaKnown RBP4.28□□□□□ -1.72
VPS35-203ENST00000562420 MMRN2Q9H8L6 949 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 RNF181Q9P0P0 153 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 FEZ2Q9UHY8 353 aaPredicted RBP4.28□□□□□ -1.72
VPS35-203ENST00000562420 ZDHHC8Q9ULC8 765 aa4.28□□□□□ -1.72
VPS35-203ENST00000562420 CDHR4A6H8M9 788 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 F2RL2O00254 374 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 CDKL5O76039 1030 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 CHEK2O96017 543 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 FTLP02792 175 aaPredicted RBP4.27□□□□□ -1.73
VPS35-203ENST00000562420 LPOP22079 712 aaPredicted RBP4.27□□□□□ -1.73
VPS35-203ENST00000562420 FGFR4P22455 802 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 TGM1P22735 817 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 SLC6A2P23975 617 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 DDX6P26196 483 aaKnown RBP eCLIP4.27□□□□□ -1.73
VPS35-203ENST00000562420 PRDX5P30044 214 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 MAP2K6P52564 334 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 POU6F2P78424 691 aaPredicted RBP4.27□□□□□ -1.73
VPS35-203ENST00000562420 PPP2R5AQ15172 486 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 SPDYE7PQ495Y7 208 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 IFIT1BQ5T764 474 aaKnown RBP4.27□□□□□ -1.73
VPS35-203ENST00000562420 EMC10Q5UCC4 262 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 TSHZ3Q63HK5 1081 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 B3GNTL1Q67FW5 361 aaPredicted RBP4.27□□□□□ -1.73
VPS35-203ENST00000562420 IGFL4Q6B9Z1 124 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 KCNV1Q6PIU1 500 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 B3GNT9Q6UX72 402 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 TICAM2Q86XR7 235 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 TMEM132CQ8N3T6 1108 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 PROKR1Q8TCW9 393 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 IPO4Q8TEX9 1081 aaKnown RBP4.27□□□□□ -1.73
VPS35-203ENST00000562420 DIS3LQ8TF46 1054 aaKnown RBP4.27□□□□□ -1.73
VPS35-203ENST00000562420 JDP2Q8WYK2 163 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 SCAMP4Q969E2 229 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 RAB24Q969Q5 203 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 CLIP3Q96DZ5 547 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 SORCS2Q96PQ0 1159 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 ADAM2Q99965 735 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 SIK2Q9H0K1 926 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 PCED1AQ9H1Q7 454 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 GPR35Q9HC97 309 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 SLC2A4RGQ9NR83 387 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 CFAP97Q9P2B7 532 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 REXO2Q9Y3B8 237 aaKnown RBP4.27□□□□□ -1.73
VPS35-203ENST00000562420 EID1Q9Y6B2 187 aa4.27□□□□□ -1.73
VPS35-203ENST00000562420 ZCCHC6Q5VYS8 1495 aaKnown RBP4.26□□□□□ -1.73
VPS35-203ENST00000562420 CENPVL1A0A0U1RR11 272 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 A0A1W2PS29 197 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 TMEM191CA6NGB0 347 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 E7ENX8 843 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 ERC2O15083 957 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 ERN1O75460 977 aaKnown RBP4.26□□□□□ -1.73
VPS35-203ENST00000562420 SCGB1D2O95969 90 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 ELANEP08246 267 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 GNAI3P08754 354 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 SBK3P0C264 359 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 TYRP14679 529 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms