RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 PPFIA1Q13136 1202 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 DUOXA2Q1HG44 320 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 CHADLQ6NUI6 762 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 EFCAB13Q8IY85 973 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 SELENOOQ9BVL4 669 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 AKT3Q9Y243 479 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 GPR25O00155 361 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 ATMINO43313 823 aaPredicted RBP17.82■□□□□ 0.44
CCDC40-201ENST00000269318 CEP104O60308 925 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 ZMYND10O75800 440 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 TNFAIP2Q03169 654 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 GLE1Q53GS7 698 aaKnown RBP17.82■□□□□ 0.44
CCDC40-201ENST00000269318 CCNI2Q6ZMN8 369 aaPredicted RBP17.82■□□□□ 0.44
CCDC40-201ENST00000269318 FAM212AQ96EL1 285 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 FLRT1Q9NZU1 646 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 GNEQ9Y223 722 aaKnown RBP17.82■□□□□ 0.44
CCDC40-201ENST00000269318 ALG6Q9Y672 507 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 CSDE1O75534 798 aaKnown RBP17.81■□□□□ 0.44
CCDC40-201ENST00000269318 ZNF132P52740 706 aa17.81■□□□□ 0.44
CCDC40-201ENST00000269318 RNASE9P60153 205 aaKnown RBP17.81■□□□□ 0.44
CCDC40-201ENST00000269318 TAF1CQ15572 869 aaPredicted RBP17.81■□□□□ 0.44
CCDC40-201ENST00000269318 TMEM192Q8IY95 271 aa17.81■□□□□ 0.44
CCDC40-201ENST00000269318 USP6NLQ92738 828 aa17.81■□□□□ 0.44
CCDC40-201ENST00000269318 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.81■□□□□ 0.44
CCDC40-201ENST00000269318 IMPG2Q9BZV3 1241 aa17.81■□□□□ 0.44
CCDC40-201ENST00000269318 CHORDC1Q9UHD1 332 aaPredicted RBP17.81■□□□□ 0.44
CCDC40-201ENST00000269318 PCDHB4Q9Y5E5 795 aa17.81■□□□□ 0.44
CCDC40-201ENST00000269318 ANK1P16157 1881 aa17.81■□□□□ 0.44
CCDC40-201ENST00000269318 A6NJR5 290 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 PGRMC1O00264 195 aaKnown RBP17.8■□□□□ 0.44
CCDC40-201ENST00000269318 CYP1A1P04798 512 aaPredicted RBP17.8■□□□□ 0.44
CCDC40-201ENST00000269318 MYBL2P10244 700 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 MCF2P10911 925 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 MYL6P60660 151 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 MRPS25P82663 173 aaKnown RBP17.8■□□□□ 0.44
CCDC40-201ENST00000269318 TMEM132AQ24JP5 1023 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 PRAMEF19Q5SWL8 479 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 DCAF12L1Q5VU92 463 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 C8orf74Q6P047 294 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 TMEM270Q6UE05 265 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 C17orf99Q6UX52 265 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 HDXQ7Z353 690 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 KIAA0319LQ8IZA0 1049 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 ZNF653Q96CK0 615 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 PPP1R16BQ96T49 567 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 UBXN6Q9BZV1 441 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 PDZD7Q9H5P4 517 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 UVRAGQ9P2Y5 699 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 TTC7AQ9ULT0 858 aaPredicted RBP17.8■□□□□ 0.44
CCDC40-201ENST00000269318 NOC2LQ9Y3T9 749 aaKnown RBP17.8■□□□□ 0.44
CCDC40-201ENST00000269318 MEFVO15553 781 aaPredicted RBP17.8■□□□□ 0.44
CCDC40-201ENST00000269318 ZEB2O60315 1214 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 ZNF865P0CJ78 1059 aaPredicted RBP17.8■□□□□ 0.44
CCDC40-201ENST00000269318 OSTNP61366 133 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 TFAMQ00059 246 aaKnown RBP17.8■□□□□ 0.44
CCDC40-201ENST00000269318 SGSM1Q2NKQ1 1148 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 SAPCD2Q86UD0 394 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 RBBP8NLQ8NC74 664 aaPredicted RBP17.8■□□□□ 0.44
CCDC40-201ENST00000269318 NUP85Q9BW27 656 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 XYLT2Q9H1B5 865 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 STIM2Q9P246 746 aa17.8■□□□□ 0.44
CCDC40-201ENST00000269318 IL18RAPO95256 599 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 CXCL8P10145 99 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 ARF4P18085 180 aaPredicted RBP17.79■□□□□ 0.44
CCDC40-201ENST00000269318 SLC7A5Q01650 507 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 POU5F1Q01860 360 aaKnown RBP17.79■□□□□ 0.44
CCDC40-201ENST00000269318 CENPCQ03188 943 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 RGMBQ6NW40 437 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 ZNF564Q8TBZ8 553 aaPredicted RBP17.79■□□□□ 0.44
CCDC40-201ENST00000269318 RPS6KC1Q96S38 1066 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 CARD9Q9H257 536 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 RPF1Q9H9Y2 349 aaKnown RBP17.79■□□□□ 0.44
CCDC40-201ENST00000269318 DYNC1LI2O43237 492 aaPredicted RBP17.79■□□□□ 0.44
CCDC40-201ENST00000269318 ECM2O94769 699 aaPredicted RBP17.79■□□□□ 0.44
CCDC40-201ENST00000269318 F2P00734 622 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 TMEM191BP0C7N4 346 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 GNA15P30679 374 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 MAP9Q49MG5 647 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 IFNL1Q8IU54 200 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 MCOLN2Q8IZK6 566 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 NLRP7Q8WX94 980 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 ALG3Q92685 438 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 CPB2Q96IY4 423 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 KRT12Q99456 494 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 NIF3L1Q9GZT8 377 aa17.79■□□□□ 0.44
CCDC40-201ENST00000269318 DOCK3Q8IZD9 2030 aa17.78■□□□□ 0.44
CCDC40-201ENST00000269318 MIF4GDA9UHW6 222 aaKnown RBP17.78■□□□□ 0.44
CCDC40-201ENST00000269318 MGAMO43451 1857 aa17.78■□□□□ 0.44
CCDC40-201ENST00000269318 TSPAN1O60635 241 aa17.78■□□□□ 0.44
CCDC40-201ENST00000269318 IGHA2P01877 340 aa17.78■□□□□ 0.44
CCDC40-201ENST00000269318 CFHP08603 1231 aa17.78■□□□□ 0.44
CCDC40-201ENST00000269318 STAG3L1P0CL83 205 aa17.78■□□□□ 0.44
CCDC40-201ENST00000269318 TNFRSF8P28908 595 aa17.78■□□□□ 0.44
CCDC40-201ENST00000269318 TNNC1P63316 161 aa17.78■□□□□ 0.44
CCDC40-201ENST00000269318 CASP8Q14790 479 aa17.78■□□□□ 0.44
CCDC40-201ENST00000269318 OLFML2BQ68BL8 750 aa17.78■□□□□ 0.44
CCDC40-201ENST00000269318 TRIM72Q6ZMU5 477 aa17.78■□□□□ 0.44
CCDC40-201ENST00000269318 ZNF410Q86VK4 478 aa17.78■□□□□ 0.44
CCDC40-201ENST00000269318 UBE2Q2Q8WVN8 375 aa17.78■□□□□ 0.44
CCDC40-201ENST00000269318 KAT2BQ92831 832 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms