RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 ZNF211Q13398 564 aaPredicted RBP22.83■■□□□ 1.25
LIME1-210ENST00000621325 CDCA2Q69YH5 1023 aaPredicted RBP22.83■■□□□ 1.25
LIME1-210ENST00000621325 ENOSF1Q7L5Y1 443 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 SHCBP1Q8NEM2 672 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 GPRC5AQ8NFJ5 357 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 IFT81Q8WYA0 676 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 CGRRF1Q99675 332 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 NR2E1Q9Y466 385 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 UMODL1Q5DID0 1318 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 PDHXO00330 501 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 MARCKSL1P49006 195 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 TTLL4Q14679 1199 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 MESDQ14696 234 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 ZPBP2Q6X784 338 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 CASKIN2Q8WXE0 1202 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 NCAPGQ9BPX3 1015 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 RNPEPQ9H4A4 650 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 NFU1Q9UMS0 254 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 PHACTR2O75167 634 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 FGGP02679 453 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 EFNA5P52803 228 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 GPS2Q13227 327 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 TCEAL1Q15170 157 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 NAA35Q5VZE5 725 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 IFT20Q8IY31 132 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 KRT35Q92764 455 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 ZNF653Q96CK0 615 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 MS4A4AQ96JQ5 239 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 MRPL4Q9BYD3 311 aaKnown RBP22.82■■□□□ 1.24
LIME1-210ENST00000621325 BTBD19C9JJ37 291 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 TOM1L1O75674 476 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 PRKCBP05771 671 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 TNFRSF8P28908 595 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 CLCN3P51790 818 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 GPR162Q16538 588 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 AADACL2Q6P093 401 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 TCP11Q8WWU5 503 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 RIN2Q8WYP3 895 aaPredicted RBP22.82■■□□□ 1.24
LIME1-210ENST00000621325 NLRP4Q96MN2 994 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 ACO2Q99798 780 aaKnown RBP22.82■■□□□ 1.24
LIME1-210ENST00000621325 NUP85Q9BW27 656 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 SMARCAD1Q9H4L7 1026 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 PNMA3Q9UL41 463 aa22.82■■□□□ 1.24
LIME1-210ENST00000621325 IQCA1LA6NCM1 817 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 SART1O43290 800 aaKnown RBP22.81■■□□□ 1.24
LIME1-210ENST00000621325 ACO1P21399 889 aaKnown RBP22.81■■□□□ 1.24
LIME1-210ENST00000621325 ADORA2AP29274 412 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 MXD4Q14582 209 aaPredicted RBP22.81■■□□□ 1.24
LIME1-210ENST00000621325 C11orf63Q6NUN7 778 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 CDR2LQ86X02 465 aaPredicted RBP22.81■■□□□ 1.24
LIME1-210ENST00000621325 CALR3Q96L12 384 aaKnown RBP22.81■■□□□ 1.24
LIME1-210ENST00000621325 PPME1Q9Y570 386 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 NUB1Q9Y5A7 615 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 ASB14A6NK59 587 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 ABLIM1O14639 778 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 CLSTN1O94985 981 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 CYP1A2P05177 515 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 FAM153BP0C7A2 387 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 COMTP21964 271 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 EPHB4P54760 987 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 ARHGAP1Q07960 439 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 MAPK6Q16659 721 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 CLEC16AQ2KHT3 1053 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 FAM153CQ494X1 144 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 ACAD10Q6JQN1 1059 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 ADAT2Q7Z6V5 191 aaKnown RBP22.81■■□□□ 1.24
LIME1-210ENST00000621325 RNPC3Q96LT9 517 aaKnown RBP22.81■■□□□ 1.24
LIME1-210ENST00000621325 VPS18Q9P253 973 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 FAM153AQ9UHL3 310 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 FAN1Q9Y2M0 1017 aa22.81■■□□□ 1.24
LIME1-210ENST00000621325 B4GALT5O43286 388 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 SYF2O95926 243 aaKnown RBP22.8■■□□□ 1.24
LIME1-210ENST00000621325 CFHP08603 1231 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 IGBP1P78318 339 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 CUL2Q13617 745 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 ZNF792Q3KQV3 632 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 TAPT1Q6NXT6 567 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 BRSK2Q8IWQ3 736 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 ZNF564Q8TBZ8 553 aaPredicted RBP22.8■■□□□ 1.24
LIME1-210ENST00000621325 FAM212AQ96EL1 285 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 CCL15-CCL14A0A0B4J2E2 113 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 MYO1CO00159 1063 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 SSTR3P32745 418 aaPredicted RBP22.8■■□□□ 1.24
LIME1-210ENST00000621325 CCL15Q16663 113 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 EFCAB12Q6NXP0 572 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 ZBTB8OSQ8IWT0 167 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 TSEN2Q8NCE0 465 aaKnown RBP22.8■■□□□ 1.24
LIME1-210ENST00000621325 BRI3BPQ8WY22 251 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 GTF3C4Q9UKN8 822 aa22.8■■□□□ 1.24
LIME1-210ENST00000621325 DIS3Q9Y2L1 958 aaKnown RBP22.8■■□□□ 1.24
LIME1-210ENST00000621325 PCNTO95613 3336 aa22.79■■□□□ 1.24
LIME1-210ENST00000621325 AGPSO00116 658 aa22.79■■□□□ 1.24
LIME1-210ENST00000621325 MTA2O94776 668 aa22.79■■□□□ 1.24
LIME1-210ENST00000621325 CST3P01034 146 aaPredicted RBP22.79■■□□□ 1.24
LIME1-210ENST00000621325 AARSP49588 968 aaKnown RBP eCLIP22.79■■□□□ 1.24
LIME1-210ENST00000621325 NOP14P78316 857 aaKnown RBP22.79■■□□□ 1.24
LIME1-210ENST00000621325 NCOA4Q13772 614 aa22.79■■□□□ 1.24
LIME1-210ENST00000621325 C2CD6Q53TS8 623 aa22.79■■□□□ 1.24
LIME1-210ENST00000621325 PHLDB2Q86SQ0 1253 aa22.79■■□□□ 1.24
LIME1-210ENST00000621325 PNMA8AQ86V59 439 aaPredicted RBP22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms