RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 MRI1Q9BV20 369 aa4.92□□□□□ -1.62
SCFD1-218ENST00000556256 KRTAP2-2Q9BYT5 123 aa4.92□□□□□ -1.62
SCFD1-218ENST00000556256 KCTD10Q9H3F6 313 aa4.92□□□□□ -1.62
SCFD1-218ENST00000556256 SIK3Q9Y2K2 1263 aa4.92□□□□□ -1.62
SCFD1-218ENST00000556256 MTO1Q9Y2Z2 717 aaKnown RBP4.92□□□□□ -1.62
SCFD1-218ENST00000556256 PHF2O75151 1096 aa4.91□□□□□ -1.62
SCFD1-218ENST00000556256 POMCP01189 267 aa4.91□□□□□ -1.62
SCFD1-218ENST00000556256 POU3F2P20265 443 aaPredicted RBP4.91□□□□□ -1.62
SCFD1-218ENST00000556256 ITPKBP27987 946 aa4.91□□□□□ -1.62
SCFD1-218ENST00000556256 ADSLP30566 484 aaPredicted RBP4.91□□□□□ -1.62
SCFD1-218ENST00000556256 EXOSC10Q01780 885 aaKnown RBP4.91□□□□□ -1.62
SCFD1-218ENST00000556256 EZH2Q15910 746 aaKnown RBP4.91□□□□□ -1.62
SCFD1-218ENST00000556256 SOGA3Q5TF21 947 aa4.91□□□□□ -1.62
SCFD1-218ENST00000556256 AFMIDQ63HM1 303 aa4.91□□□□□ -1.62
SCFD1-218ENST00000556256 KIAA0895LQ68EN5 471 aa4.91□□□□□ -1.62
SCFD1-218ENST00000556256 NPM2Q86SE8 214 aaKnown RBP4.91□□□□□ -1.62
SCFD1-218ENST00000556256 COLGALT2Q8IYK4 626 aa4.91□□□□□ -1.62
SCFD1-218ENST00000556256 OR7D4Q8NG98 312 aa4.91□□□□□ -1.62
SCFD1-218ENST00000556256 SSH3Q8TE77 659 aa4.91□□□□□ -1.62
SCFD1-218ENST00000556256 PAWRQ96IZ0 340 aaKnown RBP4.91□□□□□ -1.62
SCFD1-218ENST00000556256 KANSL2Q9H9L4 492 aa4.91□□□□□ -1.62
SCFD1-218ENST00000556256 FAM30AQ9NZY2 134 aa4.91□□□□□ -1.62
SCFD1-218ENST00000556256 KDM1AO60341 852 aa4.9□□□□□ -1.63
SCFD1-218ENST00000556256 ASMTLO95671 621 aa4.9□□□□□ -1.63
SCFD1-218ENST00000556256 PRKCGP05129 697 aa4.9□□□□□ -1.63
SCFD1-218ENST00000556256 SP140Q13342 867 aa4.9□□□□□ -1.63
SCFD1-218ENST00000556256 CT83Q5H943 113 aa4.9□□□□□ -1.63
SCFD1-218ENST00000556256 C11orf87Q6NUJ2 197 aa4.9□□□□□ -1.63
SCFD1-218ENST00000556256 Q6ZVL8 140 aa4.9□□□□□ -1.63
SCFD1-218ENST00000556256 PMFBP1Q8TBY8 1022 aa4.9□□□□□ -1.63
SCFD1-218ENST00000556256 BCO1Q9HAY6 547 aa4.9□□□□□ -1.63
SCFD1-218ENST00000556256 AOX1Q06278 1338 aa4.9□□□□□ -1.63
SCFD1-218ENST00000556256 TP73O15350 636 aa4.89□□□□□ -1.63
SCFD1-218ENST00000556256 YY2O15391 372 aa4.89□□□□□ -1.63
SCFD1-218ENST00000556256 AKR1B10O60218 316 aa4.89□□□□□ -1.63
SCFD1-218ENST00000556256 ERN1O75460 977 aaKnown RBP4.89□□□□□ -1.63
SCFD1-218ENST00000556256 CKBP12277 381 aa4.89□□□□□ -1.63
SCFD1-218ENST00000556256 SSBP2P81877 361 aaPredicted RBP4.89□□□□□ -1.63
SCFD1-218ENST00000556256 OCRLQ01968 901 aa4.89□□□□□ -1.63
SCFD1-218ENST00000556256 EIF2B5Q13144 721 aaKnown RBP4.89□□□□□ -1.63
SCFD1-218ENST00000556256 PCBP1Q15365 356 aaKnown RBP eCLIP4.89□□□□□ -1.63
SCFD1-218ENST00000556256 SF3B3Q15393 1217 aaKnown RBP4.89□□□□□ -1.63
SCFD1-218ENST00000556256 GEN1Q17RS7 908 aa4.89□□□□□ -1.63
SCFD1-218ENST00000556256 MTX3Q5HYI7 312 aa4.89□□□□□ -1.63
SCFD1-218ENST00000556256 KAZNQ674X7 775 aa4.89□□□□□ -1.63
SCFD1-218ENST00000556256 STON2Q8WXE9 905 aa4.89□□□□□ -1.63
SCFD1-218ENST00000556256 RIN2Q8WYP3 895 aaPredicted RBP4.89□□□□□ -1.63
SCFD1-218ENST00000556256 MARS2Q96GW9 593 aaKnown RBP4.89□□□□□ -1.63
SCFD1-218ENST00000556256 EDARQ9UNE0 448 aa4.89□□□□□ -1.63
SCFD1-218ENST00000556256 RAB11FIP3O75154 756 aa4.88□□□□□ -1.63
SCFD1-218ENST00000556256 ELFN1P0C7U0 828 aa4.88□□□□□ -1.63
SCFD1-218ENST00000556256 ATP5JP18859 108 aa4.88□□□□□ -1.63
SCFD1-218ENST00000556256 SCNN1BP51168 640 aa4.88□□□□□ -1.63
SCFD1-218ENST00000556256 MAPK10P53779 464 aa4.88□□□□□ -1.63
SCFD1-218ENST00000556256 TSTD2Q5T7W7 516 aa4.88□□□□□ -1.63
SCFD1-218ENST00000556256 BROXQ5VW32 411 aa4.88□□□□□ -1.63
SCFD1-218ENST00000556256 GPR156Q8NFN8 814 aa4.88□□□□□ -1.63
SCFD1-218ENST00000556256 FBXO34Q9NWN3 711 aa4.88□□□□□ -1.63
SCFD1-218ENST00000556256 HSFX1Q9UBD0 423 aa4.88□□□□□ -1.63
SCFD1-218ENST00000556256 KAT6AQ92794 2004 aa4.88□□□□□ -1.63
SCFD1-218ENST00000556256 ZNF804BA4D1E1 1349 aa4.88□□□□□ -1.63
SCFD1-218ENST00000556256 TRGV11A0A075B6L2 103 aa4.87□□□□□ -1.63
SCFD1-218ENST00000556256 CCDC151A5D8V7 595 aa4.87□□□□□ -1.63
SCFD1-218ENST00000556256 TRIM38O00635 465 aa4.87□□□□□ -1.63
SCFD1-218ENST00000556256 MPPED1O15442 326 aa4.87□□□□□ -1.63
SCFD1-218ENST00000556256 IGKV2-30P06310 120 aa4.87□□□□□ -1.63
SCFD1-218ENST00000556256 RAP2AP10114 183 aa4.87□□□□□ -1.63
SCFD1-218ENST00000556256 LSSP48449 732 aa4.87□□□□□ -1.63
SCFD1-218ENST00000556256 SART3Q15020 963 aaKnown RBP4.87□□□□□ -1.63
SCFD1-218ENST00000556256 VWA1Q6PCB0 445 aa4.87□□□□□ -1.63
SCFD1-218ENST00000556256 PEG10Q86TG7 708 aaKnown RBP4.87□□□□□ -1.63
SCFD1-218ENST00000556256 LRRTM3Q86VH5 581 aa4.87□□□□□ -1.63
SCFD1-218ENST00000556256 EAF2Q96CJ1 260 aaPredicted RBP4.87□□□□□ -1.63
SCFD1-218ENST00000556256 FCRL4Q96PJ5 515 aa4.87□□□□□ -1.63
SCFD1-218ENST00000556256 FLRT1Q9NZU1 646 aa4.87□□□□□ -1.63
SCFD1-218ENST00000556256 CDK11AQ9UQ88 783 aaPredicted RBP4.87□□□□□ -1.63
SCFD1-218ENST00000556256 ORC4O43929 436 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 BMP15O95972 392 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 IL2RBP14784 551 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 PTGER1P34995 402 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 SREBF1P36956 1147 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 GRIA3P42263 894 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 SOX10P56693 466 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 PDCD1Q15116 288 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 C21orf62-AS1Q17RA5 79 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 FCRLBQ6BAA4 426 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 ZNF529Q6P280 563 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 AMIGO2Q86SJ2 522 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 RASSF3Q86WH2 238 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 VGLL2Q8N8G2 317 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 Q8NA96 180 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 SH3TC2Q8TF17 1288 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 TFAP2BQ92481 460 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 MOCS1Q9NZB8 636 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 SLC23A1Q9UHI7 598 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 NOC2LQ9Y3T9 749 aaKnown RBP4.86□□□□□ -1.63
SCFD1-218ENST00000556256 WNT6Q9Y6F9 365 aa4.86□□□□□ -1.63
SCFD1-218ENST00000556256 E9PSI1 815 aa4.85□□□□□ -1.63
SCFD1-218ENST00000556256 FKBP9O95302 570 aa4.85□□□□□ -1.63
SCFD1-218ENST00000556256 ONECUT2O95948 504 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms