RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 RTL10Q7L3V2 364 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 CSGALNACT1Q8TDX6 532 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 SLC5A5Q92911 643 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 LENG9Q96B70 501 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 CEP89Q96ST8 783 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 BMP2KQ9NSY1 1161 aaPredicted RBP12.32□□□□□ -0.44
VPS53-207ENST00000570510 KLK14Q9P0G3 267 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 MTCL1Q9Y4B5 1905 aaKnown RBP12.32□□□□□ -0.44
VPS53-207ENST00000570510 CNOT1A5YKK6 2376 aaKnown RBP12.32□□□□□ -0.44
VPS53-207ENST00000570510 CCDC196A0A1B0GTZ2 297 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 CASTOR2A6NHX0 329 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 PRRG1O14668 218 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 ZNF197O14709 1029 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 ZNF263O14978 683 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 POU2F2P09086 479 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 CCDC192P0DO97 292 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 PSMC3P17980 439 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 RFC5P40937 340 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 KPNA1P52294 538 aaPredicted RBP12.31□□□□□ -0.44
VPS53-207ENST00000570510 NPEPPSP55786 919 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 TFDP1Q14186 410 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 RNF43Q68DV7 783 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 C1orf228Q6PIY5 440 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 YAF2Q8IY57 180 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 KDF1Q8NAX2 398 aaPredicted RBP12.31□□□□□ -0.44
VPS53-207ENST00000570510 LNX1Q8TBB1 728 aaPredicted RBP12.31□□□□□ -0.44
VPS53-207ENST00000570510 CORO1BQ9BR76 489 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 LSM14BQ9BX40 385 aaKnown RBP12.31□□□□□ -0.44
VPS53-207ENST00000570510 NXF3Q9H4D5 531 aaKnown RBP12.31□□□□□ -0.44
VPS53-207ENST00000570510 ZNF334Q9HCZ1 680 aaPredicted RBP12.31□□□□□ -0.44
VPS53-207ENST00000570510 LHX6Q9UPM6 363 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 ASPMQ8IZT6 3477 aa12.31□□□□□ -0.44
VPS53-207ENST00000570510 RALGAPA1Q6GYQ0 2036 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 KLF18A0A0U1RQI7 1052 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 SLC27A2O14975 620 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 TSPAN1O60635 241 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 PSMD10O75832 226 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 NPTXRO95502 500 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 CEBPBP17676 345 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 QARSP47897 775 aaKnown RBP12.3□□□□□ -0.44
VPS53-207ENST00000570510 FUT2Q10981 343 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 TUSC3Q13454 348 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 RAB33AQ14088 237 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 MXD4Q14582 209 aaPredicted RBP12.3□□□□□ -0.44
VPS53-207ENST00000570510 TMEM132AQ24JP5 1023 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 CYP4A22Q5TCH4 519 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 LRSAM1Q6UWE0 723 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 PDZD4Q76G19 769 aaPredicted RBP12.3□□□□□ -0.44
VPS53-207ENST00000570510 OTUD6AQ7L8S5 288 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 CACNA2D4Q7Z3S7 1137 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 ELMOD1Q8N336 334 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 CCDC148Q8NFR7 591 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 KIF12Q96FN5 646 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 LOXL4Q96JB6 756 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 CACNG4Q9UBN1 327 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 PPME1Q9Y570 386 aa12.3□□□□□ -0.44
VPS53-207ENST00000570510 FASNP49327 2511 aaKnown RBP12.3□□□□□ -0.44
VPS53-207ENST00000570510 TM4SF5O14894 197 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 ADAM12O43184 909 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 EPB41L2O43491 1005 aaKnown RBP12.29□□□□□ -0.44
VPS53-207ENST00000570510 RPP40O75818 363 aaKnown RBP12.29□□□□□ -0.44
VPS53-207ENST00000570510 STBD1O95210 358 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 CHRNB1P11230 501 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 EMC2Q15006 297 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 SLC5A9Q2M3M2 681 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 FAM78AQ5JUQ0 283 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 RNF20Q5VTR2 975 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 DAB2IPQ5VWQ8 1189 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 SLC27A1Q6PCB7 646 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 FERMT3Q86UX7 667 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 ZNF687Q8N1G0 1237 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 DEPDC1BQ8WUY9 529 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 PAAF1Q9BRP4 392 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 ADAM33Q9BZ11 813 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 SLITRK6Q9H5Y7 841 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 DHX33Q9H6R0 707 aaKnown RBP12.29□□□□□ -0.44
VPS53-207ENST00000570510 TRPV5Q9NQA5 729 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 CDY1Q9Y6F8 540 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 CEP295Q9C0D2 2601 aa12.29□□□□□ -0.44
VPS53-207ENST00000570510 SHISA7A6NL88 538 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 SRRM3A6NNA2 597 aaPredicted RBP12.28□□□□□ -0.44
VPS53-207ENST00000570510 MARCH6O60337 910 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 EIF5BO60841 1220 aaKnown RBP12.28□□□□□ -0.44
VPS53-207ENST00000570510 KIF4AO95239 1232 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 THP07101 528 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 PTENP60484 403 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 RING1Q06587 406 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 ZNF252P-AS1Q0IIN9 211 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 PTGDRQ13258 359 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 XKR9Q5GH70 373 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 DGKKQ5KSL6 1271 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 CREB3L3Q68CJ9 461 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 IQCEQ6IPM2 695 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.28□□□□□ -0.44
VPS53-207ENST00000570510 WDR5BQ86VZ2 330 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 TBCKQ8TEA7 893 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 ZCCHC14Q8WYQ9 949 aaKnown RBP12.28□□□□□ -0.44
VPS53-207ENST00000570510 SMARCD2Q92925 531 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 MSANTD3Q96H12 275 aa12.28□□□□□ -0.44
VPS53-207ENST00000570510 CCDC43Q96MW1 224 aaKnown RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms