RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 NCLNQ969V3 563 aa20.24■□□□□ 0.83
COL27A1-207ENST00000494090 REEP2Q9BRK0 252 aa20.24■□□□□ 0.83
COL27A1-207ENST00000494090 HSPBP1Q9NZL4 362 aa20.24■□□□□ 0.83
COL27A1-207ENST00000494090 DAGLAQ9Y4D2 1042 aa20.24■□□□□ 0.83
COL27A1-207ENST00000494090 PPP1R12AO14974 1030 aaPredicted RBP20.24■□□□□ 0.83
COL27A1-207ENST00000494090 MYCP01106 439 aaPredicted RBP20.24■□□□□ 0.83
COL27A1-207ENST00000494090 FGFR4P22455 802 aa20.24■□□□□ 0.83
COL27A1-207ENST00000494090 ARSEP51690 589 aa20.24■□□□□ 0.83
COL27A1-207ENST00000494090 STRIP1Q5VSL9 837 aa20.24■□□□□ 0.83
COL27A1-207ENST00000494090 NUDCD3Q8IVD9 361 aa20.24■□□□□ 0.83
COL27A1-207ENST00000494090 KIF12Q96FN5 646 aa20.24■□□□□ 0.83
COL27A1-207ENST00000494090 PIDD1Q9HB75 910 aa20.24■□□□□ 0.83
COL27A1-207ENST00000494090 TAF6LQ9Y6J9 622 aa20.24■□□□□ 0.83
COL27A1-207ENST00000494090 PTK2BQ14289 1009 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 MORF4L2Q15014 288 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 HACD3Q9P035 362 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 ZNRF3Q9ULT6 936 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 HPS5Q9UPZ3 1129 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 NEXMIFQ5QGS0 1516 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 CNTNAP5Q8WYK1 1306 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 DGAT1O75907 488 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 KITP10721 976 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 COG2Q14746 738 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 XKR3Q5GH77 459 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 FAM102AQ5T9C2 384 aaPredicted RBP20.23■□□□□ 0.83
COL27A1-207ENST00000494090 TRMT10CQ7L0Y3 403 aaKnown RBP20.23■□□□□ 0.83
COL27A1-207ENST00000494090 PI4K2BG5E9Z4 385 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 STAT5BP51692 787 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 PRAMEP78395 509 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 C16orf86Q6ZW13 317 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 NYAP1Q6ZVC0 841 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 RCOR2Q8IZ40 523 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 NDE1Q9NXR1 346 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 GTSE1Q9NYZ3 720 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 TRIM10Q9UDY6 481 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 ENTPD3O75355 529 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 KCNB2Q92953 911 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 ANLNQ9NQW6 1124 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 NYAP2Q9P242 653 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 WDR35Q9P2L0 1181 aa20.23■□□□□ 0.83
COL27A1-207ENST00000494090 MEFVO15553 781 aaPredicted RBP20.22■□□□□ 0.83
COL27A1-207ENST00000494090 MYO1DO94832 1006 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 CPB1P15086 417 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 MXD4Q14582 209 aaPredicted RBP20.22■□□□□ 0.83
COL27A1-207ENST00000494090 MTBPQ96DY7 904 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 KATNAL1Q9BW62 490 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 TEX13BQ9BXU2 312 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 SENP2Q9HC62 589 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 KDM6AO15550 1401 aaPredicted RBP20.22■□□□□ 0.83
COL27A1-207ENST00000494090 NCOA3Q9Y6Q9 1424 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 ANP32DO95626 131 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 GJD4Q96KN9 370 aaPredicted RBP20.22■□□□□ 0.83
COL27A1-207ENST00000494090 TSC22D3Q99576 134 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 ITIH2P19823 946 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 HSD17B4P51659 736 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 NKX1-1Q15270 411 aaPredicted RBP20.22■□□□□ 0.83
COL27A1-207ENST00000494090 EPAS1Q99814 870 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 MTIF3Q9H2K0 278 aaKnown RBP20.22■□□□□ 0.83
COL27A1-207ENST00000494090 SMYD3Q9H7B4 428 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 CCDC22O60826 627 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 AP2B1P63010 937 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 HIF1AQ16665 826 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 TEX2Q8IWB9 1127 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 KCTD17Q8N5Z5 321 aa20.22■□□□□ 0.83
COL27A1-207ENST00000494090 ZBBXA8MT70 800 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 PPP1R3GB7ZBB8 358 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 EIF3HO15372 352 aaKnown RBP eCLIP20.21■□□□□ 0.837e-16■■■□□ 17.4
COL27A1-207ENST00000494090 TBC1D16Q8TBP0 767 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 POLR3CQ9BUI4 534 aaPredicted RBP20.21■□□□□ 0.83
COL27A1-207ENST00000494090 DHX35Q9H5Z1 703 aaKnown RBP20.21■□□□□ 0.83
COL27A1-207ENST00000494090 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.21■□□□□ 0.83
COL27A1-207ENST00000494090 CAMSAP1Q5T5Y3 1602 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 CCDC195A0A1B0GUA6 201 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 PRKCBP05771 671 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 ADORA2BP29275 332 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 SPATA21Q7Z572 469 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 KLC4Q9NSK0 619 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 ZNF197O14709 1029 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 TBCCQ15814 346 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 SYN2Q92777 582 aaPredicted RBP20.21■□□□□ 0.83
COL27A1-207ENST00000494090 PGBD4Q96DM1 585 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 RBM12Q9NTZ6 932 aaKnown RBP20.21■□□□□ 0.83
COL27A1-207ENST00000494090 TEKT2Q9UIF3 430 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 TNPO2O14787 897 aaKnown RBP20.21■□□□□ 0.83
COL27A1-207ENST00000494090 CDH6P55285 790 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 ZNF235Q14590 738 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 AGBL2Q5U5Z8 902 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 KIRREL3Q8IZU9 778 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 BTBD6Q96KE9 485 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 SMG5Q9UPR3 1016 aaKnown RBP20.21■□□□□ 0.83
COL27A1-207ENST00000494090 ARL2BPQ9Y2Y0 163 aa20.21■□□□□ 0.83
COL27A1-207ENST00000494090 PSMD3O43242 534 aa20.2■□□□□ 0.82
COL27A1-207ENST00000494090 CAMTA2O94983 1202 aa20.2■□□□□ 0.82
COL27A1-207ENST00000494090 TXNP10599 105 aaKnown RBP20.2■□□□□ 0.82
COL27A1-207ENST00000494090 FXR2P51116 673 aaKnown RBP eCLIP20.2■□□□□ 0.825e-7■■□□□ 12.3
COL27A1-207ENST00000494090 CYFIP1Q7L576 1253 aa20.2■□□□□ 0.82
COL27A1-207ENST00000494090 ASAP3Q8TDY4 903 aa20.2■□□□□ 0.82
COL27A1-207ENST00000494090 ZNF473Q8WTR7 871 aaKnown RBP20.2■□□□□ 0.82
COL27A1-207ENST00000494090 PPP2R3CQ969Q6 453 aa20.2■□□□□ 0.82
COL27A1-207ENST00000494090 SRLQ86TD4 932 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms