RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 TMEM206Q9H813 350 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 RC3H2Q9HBD1 1191 aaKnown RBP4.39□□□□□ -1.71
LIG4-201ENST00000356922 ANO10Q9NW15 660 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 LRRIQ3A6PVS8 624 aaPredicted RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 OGTO15294 1046 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 TEX33O43247 280 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 EXOC3O60645 756 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 DGKIO75912 1065 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 FGBP02675 491 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 MATR3P43243 847 aaKnown RBP eCLIP4.38□□□□□ -1.71
LIG4-201ENST00000356922 KLK7P49862 253 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 SCNN1GP51170 649 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 FKBP3Q00688 224 aaKnown RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 ZBTB6Q15916 424 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 PAN2Q504Q3 1202 aaKnown RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 DPY19L2P1Q6NXN4 242 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 CNKSR3Q6P9H4 555 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 SLC9A9Q8IVB4 645 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 USP38Q8NB14 1042 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 XXYLT1Q8NBI6 393 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 ENOX1Q8TC92 643 aaKnown RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 PARD3BQ8TEW8 1205 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 BCL7CQ8WUZ0 217 aaPredicted RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 MFSD14AQ96MC6 490 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 CASD1Q96PB1 797 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 TRAIPQ9BWF2 469 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 TUBGCP4Q9UGJ1 667 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 SCN1AP35498 2009 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 RNF225M0QZC1 329 aaPredicted RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 PSMA7O14818 248 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 DLATP10515 647 aaKnown RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 ZSCAN20P17040 1043 aaPredicted RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 GARTP22102 1010 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 ERCC5P28715 1186 aaPredicted RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 C1QBPQ07021 282 aaKnown RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 IKBKEQ14164 716 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 SPATA1Q5VX52 437 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 JADE1Q6IE81 842 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 CHRDL2Q6WN34 429 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 TMEM174Q8WUU8 243 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 SEPT8Q92599 483 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 SEMA4DQ92854 862 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 SLC35C1Q96A29 364 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 CCDC47Q96A33 483 aaKnown RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 ZNF689Q96CS4 500 aaPredicted RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 MMRN2Q9H8L6 949 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 CHST12Q9NRB3 414 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 PARP2Q9UGN5 583 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 SIX4Q9UIU6 781 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 INPP5FQ9Y2H2 1132 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 DNAH14Q0VDD8 3507 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 FRYLO94915 3013 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 ZBBXA8MT70 800 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 SPTLC1O15269 473 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 EXTL3O43909 919 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 VNN1O95497 513 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 MCF2P10911 925 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 GRM5P41594 1212 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 GCLMP48507 274 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 CYP24A1Q07973 514 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 EDRF1Q3B7T1 1238 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 XKR4Q5GH76 650 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 C12orf56Q8IXR9 622 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 GPD1LQ8N335 351 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 SYAP1Q96A49 352 aaPredicted RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 CRACR2AQ9BSW2 395 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 PI4K2AQ9BTU6 479 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 VPS16Q9H269 839 aa4.38□□□□□ -1.71
LIG4-201ENST00000356922 RBAKQ9NYW8 714 aaPredicted RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 COLQQ9Y215 455 aaPredicted RBP4.38□□□□□ -1.71
LIG4-201ENST00000356922 I3L4J1 428 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 EPHB6O15197 1021 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 HCRTO43612 131 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 CAPN2P17655 700 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 CLCNKBP51801 687 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 MCCD1P59942 119 aaPredicted RBP4.37□□□□□ -1.71
LIG4-201ENST00000356922 LRRC63Q05C16 580 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 KRT31Q15323 416 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 SPOPLQ6IQ16 392 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 HS2ST1Q7LGA3 356 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 TAS1R1Q7RTX1 841 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 GPIHBP1Q8IV16 184 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 TRIM59Q8IWR1 403 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 C1orf127Q8N9H9 656 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 LMO3Q8TAP4 145 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 HASPINQ8TF76 798 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 HVCN1Q96D96 273 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 B3GALT6Q96L58 329 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 SNX27Q96L92 541 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 CNOT6LQ96LI5 555 aaKnown RBP4.37□□□□□ -1.71
LIG4-201ENST00000356922 ACAP3Q96P50 834 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 PPP1R10Q96QC0 940 aaKnown RBP4.37□□□□□ -1.71
LIG4-201ENST00000356922 TRIM6Q9C030 488 aaPredicted RBP4.37□□□□□ -1.71
LIG4-201ENST00000356922 MTMR12Q9C0I1 747 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 TSPY26PQ9H489 355 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 AJAP1Q9UKB5 411 aaPredicted RBP4.37□□□□□ -1.71
LIG4-201ENST00000356922 YBX2Q9Y2T7 364 aaKnown RBP4.37□□□□□ -1.71
LIG4-201ENST00000356922 CITO14578 2027 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 FNDC1Q4ZHG4 1894 aaPredicted RBP4.37□□□□□ -1.71
LIG4-201ENST00000356922 CASTOR2A6NHX0 329 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms