RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 EXOC7Q9UPT5 735 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 USP20Q9Y2K6 914 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 TRIP11Q15643 1979 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 M0QZ92 97 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 INPPL1O15357 1258 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 SLC16A3O15427 465 aaKnown RBP11.54□□□□□ -0.56
VPS33A-204ENST00000540669 MGEA5O60502 916 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 RPS6KA5O75582 802 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 TIMP1P01033 207 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 NR3C1P04150 777 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 MCF2P10911 925 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 GHRP10912 638 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 ATF7P17544 494 aaPredicted RBP11.54□□□□□ -0.56
VPS33A-204ENST00000540669 FGFR4P22455 802 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 CD52P31358 61 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 STRN3Q13033 797 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 ATF7IP2Q5U623 682 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 SPATA1Q5VX52 437 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 HS2ST1Q7LGA3 356 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 ST3GAL5Q9UNP4 418 aa11.54□□□□□ -0.56
VPS33A-204ENST00000540669 FNDC1Q4ZHG4 1894 aaPredicted RBP11.53□□□□□ -0.56
VPS33A-204ENST00000540669 N4BP3O15049 544 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 ZNF623O75123 536 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 AKAP3O75969 853 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 NR2F2P24468 414 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 CYP2C18P33260 490 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 LIG4P49917 911 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 CLDN10P78369 228 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 FKBP3Q00688 224 aaKnown RBP11.53□□□□□ -0.56
VPS33A-204ENST00000540669 NOLC1Q14978 699 aaKnown RBP eCLIP11.53□□□□□ -0.56
VPS33A-204ENST00000540669 DCAF4L1Q3SXM0 396 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 XKR4Q5GH76 650 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 KLHL10Q6JEL2 608 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 MFSD5Q6N075 450 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 NOTUMQ6P988 496 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 SLC27A1Q6PCB7 646 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 CATSPER4Q7RTX7 472 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 ZNF598Q86UK7 904 aaKnown RBP11.53□□□□□ -0.56
VPS33A-204ENST00000540669 AOPEPQ8N6M6 819 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 ZSWIM2Q8NEG5 633 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 NOC3LQ8WTT2 800 aaKnown RBP11.53□□□□□ -0.56
VPS33A-204ENST00000540669 ZBTB45Q96K62 511 aaPredicted RBP11.53□□□□□ -0.56
VPS33A-204ENST00000540669 NAT10Q9H0A0 1025 aaKnown RBP11.53□□□□□ -0.56
VPS33A-204ENST00000540669 TSPYL2Q9H2G4 693 aaPredicted RBP11.53□□□□□ -0.56
VPS33A-204ENST00000540669 THAP9Q9H5L6 903 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 HSPBP1Q9NZL4 362 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 CPSF3Q9UKF6 684 aaKnown RBP11.53□□□□□ -0.56
VPS33A-204ENST00000540669 NFE2L3Q9Y4A8 694 aa11.53□□□□□ -0.56
VPS33A-204ENST00000540669 C9IYK1 514 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 GPR182O15218 404 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 OGTO15294 1046 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 CALUO43852 315 aaPredicted RBP11.52□□□□□ -0.57
VPS33A-204ENST00000540669 ERLIN2O94905 339 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 GRM5P41594 1212 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 CASP4P49662 377 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 WNT7BP56706 349 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 STX17P56962 302 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 FAM189BP81408 668 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 PAK2Q13177 524 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 ZNF568Q3ZCX4 644 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 ZBTB41Q5SVQ8 909 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 C1orf220Q5T0J3 134 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 SLFN12LQ6IEE8 588 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 MRPL10Q7Z7H8 261 aaKnown RBP11.52□□□□□ -0.57
VPS33A-204ENST00000540669 RTN4RL1Q86UN2 441 aaPredicted RBP11.52□□□□□ -0.57
VPS33A-204ENST00000540669 LUZP1Q86V48 1076 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 BRSK2Q8IWQ3 736 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 TRIM59Q8IWR1 403 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 CEP120Q8N960 986 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 SMG8Q8ND04 991 aaKnown RBP11.52□□□□□ -0.57
VPS33A-204ENST00000540669 PLEKHO2Q8TD55 490 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 SP7Q8TDD2 431 aaPredicted RBP11.52□□□□□ -0.57
VPS33A-204ENST00000540669 APBB2Q92870 758 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 CPB2Q96IY4 423 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 SCLT1Q96NL6 688 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 IFIH1Q9BYX4 1025 aaKnown RBP11.52□□□□□ -0.57
VPS33A-204ENST00000540669 RBSNQ9H1K0 784 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 TMEM39AQ9NV64 488 aa11.52□□□□□ -0.57
VPS33A-204ENST00000540669 PIN4Q9Y237 131 aaKnown RBP11.52□□□□□ -0.57
VPS33A-204ENST00000540669 LRRC10BA6NIK2 292 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 H0YGN5 161 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 CLDN3O15551 220 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 EXTL3O43909 919 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 PFKMP08237 780 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 RAG1P15918 1043 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 RAB27AP51159 221 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 ARMCX5Q6P1M9 558 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 FILIP1Q7Z7B0 1213 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 CBWD2Q8IUF1 395 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 GPD1LQ8N335 351 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 CSGALNACT2Q8N6G5 542 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 XXYLT1Q8NBI6 393 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 DBF4BQ8NFT6 615 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 SCLYQ96I15 445 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 MFSD14AQ96MC6 490 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 TSG101Q99816 390 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 FTHL17Q9BXU8 183 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 EIF2AQ9BY44 585 aaKnown RBP11.51□□□□□ -0.57
VPS33A-204ENST00000540669 PPP1R12CQ9BZL4 782 aa11.51□□□□□ -0.57
VPS33A-204ENST00000540669 RC3H2Q9HBD1 1191 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms