RNA–Protein interactions for RNA: ENST00000509162.1

TOPBP1-207, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-207ENST00000509162 POLR3FQ9H1D9 316 aaPredicted RBP8.03□□□□□ -1.12
TOPBP1-207ENST00000509162 SUGCTQ9HAC7 445 aa8.03□□□□□ -1.12
TOPBP1-207ENST00000509162 DDX19AQ9NUU7 478 aaKnown RBP8.03□□□□□ -1.12
TOPBP1-207ENST00000509162 SUCLA2Q9P2R7 463 aaPredicted RBP8.03□□□□□ -1.12
TOPBP1-207ENST00000509162 DBR1Q9UK59 544 aaKnown RBP8.03□□□□□ -1.12
TOPBP1-207ENST00000509162 ST3GAL5Q9UNP4 418 aa8.03□□□□□ -1.12
TOPBP1-207ENST00000509162 CEP131Q9UPN4 1083 aa8.03□□□□□ -1.12
TOPBP1-207ENST00000509162 AKT3Q9Y243 479 aa8.03□□□□□ -1.12
TOPBP1-207ENST00000509162 GINS2Q9Y248 185 aa8.03□□□□□ -1.12
TOPBP1-207ENST00000509162 KIF3AQ9Y496 699 aa8.03□□□□□ -1.12
TOPBP1-207ENST00000509162 PCDHA11Q9Y5I1 949 aa8.03□□□□□ -1.12
TOPBP1-207ENST00000509162 SLC4A7Q9Y6M7 1214 aa8.03□□□□□ -1.12
TOPBP1-207ENST00000509162 PLXNA4Q9HCM2 1894 aa8.02□□□□□ -1.12
TOPBP1-207ENST00000509162 A0A0C4DFX4 3053 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 NPHP3-ACAD11A0A0J9YXS1 232 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 ABHD14A-ACY1A0A1B0GW23 586 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 LINC01553A4QN01 128 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 ENPP3O14638 875 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 MAGEB2O15479 319 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 B4GALT5O43286 388 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 TSPAN1O60635 241 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 BAG4O95429 457 aaKnown RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 PARNO95453 639 aaKnown RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 ZSCAN22P10073 491 aaPredicted RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 MARCKSP29966 332 aaPredicted RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 HOXA11P31270 313 aaPredicted RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 SOX11P35716 441 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 CCT6AP40227 531 aaKnown RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 POLGP54098 1239 aaPredicted RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 SLC12A3P55017 1021 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 VAC14Q08AM6 782 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 KCNA1Q09470 495 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 LAMTOR4Q0VGL1 99 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 PAK2Q13177 524 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 KARSQ15046 597 aaKnown RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 FOXD4L6Q3SYB3 417 aaPredicted RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 CLLU1OSQ5K130 101 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 CDCA2Q69YH5 1023 aaPredicted RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 FOXD4L3Q6VB84 417 aaPredicted RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 ZNF598Q86UK7 904 aaKnown RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 DEFB123Q8N688 67 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 EPS8L1Q8TE68 723 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 PRPF31Q8WWY3 499 aaKnown RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 ZNF689Q96CS4 500 aaPredicted RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 EPSTI1Q96J88 318 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 NLRP4Q96MN2 994 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 FIZ1Q96SL8 496 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 SPSB2Q99619 263 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 C17orf80Q9BSJ5 609 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 CCDC113Q9H0I3 377 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 GZF1Q9H116 711 aaPredicted RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 CSRNP2Q9H175 543 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 CXCL16Q9H2A7 254 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 SEMA6BQ9H3T3 888 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 CERS4Q9HA82 394 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 ATP6V0A4Q9HBG4 840 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 NRBP2Q9NSY0 501 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 ANKEF1Q9NU02 776 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 LRWD1Q9UFC0 647 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 KIAA1024Q9UPX6 916 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 COL4A3BPQ9Y5P4 624 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 SQORQ9Y6N5 450 aa8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 MORC2Q9Y6X9 1032 aaPredicted RBP8.02□□□□□ -1.13
TOPBP1-207ENST00000509162 LAD1O00515 517 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 ABLIM1O14639 778 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 MEFVO15553 781 aaPredicted RBP8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 MARCH6O60337 910 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 RPS6KA5O75582 802 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 FGFR1P11362 822 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 PLCG1P19174 1290 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 AFF1P51825 1210 aaKnown RBP8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 CEBPZQ03701 1054 aaKnown RBP8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 ARSHQ5FYA8 562 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 AXDND1Q5T1B0 1012 aaPredicted RBP8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 TMCO4Q5TGY1 634 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 IER5Q5VY09 327 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 ARL6IP4Q66PJ3 421 aaKnown RBP8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 SHC4Q6S5L8 630 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 MAEAQ7L5Y9 396 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 RHPN2Q8IUC4 686 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 NME8Q8N427 588 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 LINC00301Q8NCQ3 95 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 PHOSPHO2Q8TCD6 241 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 GDPD5Q8WTR4 605 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 SYMPKQ92797 1274 aaKnown RBP8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 APBB2Q92870 758 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 TOP1MTQ969P6 601 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 MAP7D2Q96T17 732 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 CDX2Q99626 313 aaPredicted RBP8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 FGFBP2Q9BYJ0 223 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 BHMT2Q9H2M3 363 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 PRDM12Q9H4Q4 367 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 ZNF576Q9H609 170 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 RGS18Q9NS28 235 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 AGPAT5Q9NUQ2 364 aa8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 MRPL42Q9Y6G3 142 aaKnown RBP8.01□□□□□ -1.13
TOPBP1-207ENST00000509162 TMEM265A0A087WTH1 108 aa8□□□□□ -1.13
TOPBP1-207ENST00000509162 DGKIO75912 1065 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms