RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 NFKBIBQ15653 356 aa16.28■□□□□ 0.2
COL9A3-209ENST00000469852 FAM26FQ5R3K3 315 aa16.28■□□□□ 0.2
COL9A3-209ENST00000469852 NT5DC1Q5TFE4 455 aa16.28■□□□□ 0.2
COL9A3-209ENST00000469852 RTN4RL1Q86UN2 441 aaPredicted RBP16.28■□□□□ 0.2
COL9A3-209ENST00000469852 CDR2LQ86X02 465 aaPredicted RBP16.28■□□□□ 0.2
COL9A3-209ENST00000469852 USP38Q8NB14 1042 aa16.28■□□□□ 0.2
COL9A3-209ENST00000469852 KIAA0895Q8NCT3 520 aa16.28■□□□□ 0.2
COL9A3-209ENST00000469852 LBHD1Q9BQE6 289 aaPredicted RBP16.28■□□□□ 0.2
COL9A3-209ENST00000469852 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.28■□□□□ 0.22e-16■□□□□ 9
COL9A3-209ENST00000469852 NUP62CLQ9H1M0 184 aa16.28■□□□□ 0.2
COL9A3-209ENST00000469852 TMEM134Q9H6X4 195 aa16.28■□□□□ 0.2
COL9A3-209ENST00000469852 EXOC1Q9NV70 894 aa16.28■□□□□ 0.2
COL9A3-209ENST00000469852 K7ERI5 159 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 GPR182O15218 404 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 RHOBTB3O94955 611 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 GCNT3O95395 438 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 ARF4P18085 180 aaPredicted RBP16.27■□□□□ 0.2
COL9A3-209ENST00000469852 EFNA5P52803 228 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 GTF2BQ00403 316 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 DSC3Q14574 896 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 FAM187BQ17R55 369 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 TMEM240Q5SV17 173 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 ISM2Q6H9L7 571 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 CNKSR3Q6P9H4 555 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 PPP4R3CPQ6ZMV5 832 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 ZNF365Q70YC5 407 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 EPM2AIP1Q7L775 607 aaPredicted RBP16.27■□□□□ 0.2
COL9A3-209ENST00000469852 SEPT8Q92599 483 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 SMARCE1Q969G3 411 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 GDF15Q99988 308 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 ST6GALNAC4Q9H4F1 302 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 AGPAT5Q9NUQ2 364 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 PRMT7Q9NVM4 692 aaPredicted RBP16.27■□□□□ 0.2
COL9A3-209ENST00000469852 TMEM63CQ9P1W3 806 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 PIN4Q9Y237 131 aaKnown RBP16.27■□□□□ 0.2
COL9A3-209ENST00000469852 GDAQ9Y2T3 454 aa16.27■□□□□ 0.2
COL9A3-209ENST00000469852 CNTNAP2Q9UHC6 1331 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 TISP43B9A030 160 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 ACKR2O00590 384 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 ERLIN2O94905 339 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 PRPF6O94906 941 aaKnown RBP16.26■□□□□ 0.19
COL9A3-209ENST00000469852 HOXD13P35453 343 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 KCNB1Q14721 858 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 MAPK6Q16659 721 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 C9orf50Q5SZB4 431 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 EEF1DP3Q658K8 133 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 OTOP2Q7RTS6 562 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 SMYD4Q8IYR2 804 aaPredicted RBP16.26■□□□□ 0.19
COL9A3-209ENST00000469852 RPUSD2Q8IZ73 545 aaKnown RBP16.26■□□□□ 0.19
COL9A3-209ENST00000469852 KCNN1Q92952 543 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 CCDC34Q96HJ3 373 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 LRCH3Q96II8 777 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 TARS2Q9BW92 718 aaKnown RBP16.26■□□□□ 0.19
COL9A3-209ENST00000469852 MAN1B1Q9UKM7 699 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 TBX20Q9UMR3 447 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 ZMYM2Q9UBW7 1377 aa16.26■□□□□ 0.19
COL9A3-209ENST00000469852 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.25■□□□□ 0.19
COL9A3-209ENST00000469852 BIN1O00499 593 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 PFKMP08237 780 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 BMP6P22004 513 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 BMP8BP34820 402 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 PRPF4BQ13523 1007 aaKnown RBP16.25■□□□□ 0.19
COL9A3-209ENST00000469852 UBXN11Q5T124 520 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 L1TD1Q5T7N2 865 aaKnown RBP16.25■□□□□ 0.19
COL9A3-209ENST00000469852 SLC39A4Q6P5W5 647 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.25■□□□□ 0.19
COL9A3-209ENST00000469852 MAP4K3Q8IVH8 894 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 SCFD1Q8WVM8 642 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 APBB2Q92870 758 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 PRIMPOLQ96LW4 560 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 GSDMAQ96QA5 445 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 ADAM2Q99965 735 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 PDZD7Q9H5P4 517 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 CXXC1Q9P0U4 656 aaPredicted RBP16.25■□□□□ 0.19
COL9A3-209ENST00000469852 KIAA1468Q9P260 1216 aa16.25■□□□□ 0.19
COL9A3-209ENST00000469852 HOOK1Q9UJC3 728 aaKnown RBP16.25■□□□□ 0.19
COL9A3-209ENST00000469852 ANKRD63C9JTQ0 380 aa16.24■□□□□ 0.19
COL9A3-209ENST00000469852 ENPP3O14638 875 aa16.24■□□□□ 0.19
COL9A3-209ENST00000469852 ABLIM1O14639 778 aa16.24■□□□□ 0.19
COL9A3-209ENST00000469852 SMC2O95347 1197 aa16.24■□□□□ 0.19
COL9A3-209ENST00000469852 FGBP02675 491 aa16.24■□□□□ 0.19
COL9A3-209ENST00000469852 ZBTB45Q96K62 511 aaPredicted RBP16.24■□□□□ 0.19
COL9A3-209ENST00000469852 ACO2Q99798 780 aaKnown RBP16.24■□□□□ 0.19
COL9A3-209ENST00000469852 EIF2AQ9BY44 585 aaKnown RBP16.24■□□□□ 0.19
COL9A3-209ENST00000469852 HAPLN2Q9GZV7 340 aa16.24■□□□□ 0.19
COL9A3-209ENST00000469852 KCNG1Q9UIX4 513 aa16.24■□□□□ 0.19
COL9A3-209ENST00000469852 MAPK8IP1Q9UQF2 711 aa16.24■□□□□ 0.19
COL9A3-209ENST00000469852 A0A1B0GUA9 196 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 H0YCG3 227 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 DEFB103AP81534 67 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 STRN3Q13033 797 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 PSMD2Q13200 908 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 MORC3Q14149 939 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 IKBKEQ14164 716 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 PCBP1Q15365 356 aaKnown RBP eCLIP16.23■□□□□ 0.19
COL9A3-209ENST00000469852 SHHQ15465 462 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 KLHL40Q2TBA0 621 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 ATF7IP2Q5U623 682 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 CAVIN1Q6NZI2 390 aaKnown RBP16.23■□□□□ 0.19
COL9A3-209ENST00000469852 PSRC1Q6PGN9 363 aaPredicted RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms