RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CENPPQ6IPU0 288 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 PPP4R3CPQ6ZMV5 832 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 RUFY4Q6ZNE9 571 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 GAS2L3Q86XJ1 694 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 GOLGA5Q8TBA6 731 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 PPP1R13LQ8WUF5 828 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 NLRP4Q96MN2 994 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 TSG101Q99816 390 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 FAM49AQ9H0Q0 323 aaPredicted RBP11.81□□□□□ -0.52
SS18-213ENST00000579640 CBX8Q9HC52 389 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 CGNQ9P2M7 1197 aaKnown RBP11.81□□□□□ -0.52
SS18-213ENST00000579640 TBX20Q9UMR3 447 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 NOD1Q9Y239 953 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 TRIP12Q14669 1992 aaPredicted RBP11.81□□□□□ -0.52
SS18-213ENST00000579640 MROH7Q68CQ1 1323 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 ADGRA3Q8IWK6 1321 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 K7ERI5 159 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 PDXKO00764 312 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 CALUO43852 315 aaPredicted RBP11.81□□□□□ -0.52
SS18-213ENST00000579640 CAND2O75155 1236 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 VTNP04004 478 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 SRGAP2CP0DJJ0 459 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 CDK7P50613 346 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 MYL5Q02045 173 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 STRN3Q13033 797 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 IQCB1Q15051 598 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 ZC2HC1CQ53FD0 456 aaPredicted RBP11.81□□□□□ -0.52
SS18-213ENST00000579640 MAP4K3Q8IVH8 894 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 KSR1Q8IVT5 923 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 DNAJB3Q8WWF6 145 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 KIFC3Q9BVG8 833 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 KCTD10Q9H3F6 313 aa11.81□□□□□ -0.52
SS18-213ENST00000579640 TYW1Q9NV66 732 aaKnown RBP11.81□□□□□ -0.52
SS18-213ENST00000579640 SIP14410 1827 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 M0QZ92 97 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 MNX1P50219 401 aaPredicted RBP11.8□□□□□ -0.52
SS18-213ENST00000579640 NLRP11P59045 1033 aaKnown RBP11.8□□□□□ -0.52
SS18-213ENST00000579640 TPM4P67936 248 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 PCBP1Q15365 356 aaKnown RBP eCLIP11.8□□□□□ -0.52
SS18-213ENST00000579640 MAPK6Q16659 721 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 EDRF1Q3B7T1 1238 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 SPATA1Q5VX52 437 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 HS2ST1Q7LGA3 356 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 SRGAP1Q7Z6B7 1085 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 NELFCDQ8IXH7 590 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 SYCP3Q8IZU3 236 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 AOPEPQ8N6M6 819 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 NLRP7Q8WX94 980 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 SCLT1Q96NL6 688 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 GCOM2Q9BZD3 368 aaPredicted RBP11.8□□□□□ -0.52
SS18-213ENST00000579640 INO80BQ9C086 356 aaPredicted RBP11.8□□□□□ -0.52
SS18-213ENST00000579640 GBP3Q9H0R5 595 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 SEMA6BQ9H3T3 888 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 TRAF3IP3Q9Y228 551 aa11.8□□□□□ -0.52
SS18-213ENST00000579640 A0A087WZ62 844 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 GOLGA6L19H0YKK7 550 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 GPR32O75388 356 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 FGFR1OPO95684 399 aaKnown RBP11.79□□□□□ -0.52
SS18-213ENST00000579640 COL6A1P12109 1028 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 HOXD13P35453 343 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 STX17P56962 302 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 GSE1Q14687 1217 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 NFIL3Q16649 462 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 TPD52L1Q16890 204 aaPredicted RBP11.79□□□□□ -0.52
SS18-213ENST00000579640 ZCWPW2Q504Y3 356 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 C1orf53Q5VUE5 145 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 TTI2Q6NXR4 508 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 DHX40Q8IX18 779 aaKnown RBP11.79□□□□□ -0.52
SS18-213ENST00000579640 NOC3LQ8WTT2 800 aaKnown RBP11.79□□□□□ -0.52
SS18-213ENST00000579640 PRIMPOLQ96LW4 560 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 CTAGE1Q96RT6 745 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 FDXACB1Q9BRP7 624 aaPredicted RBP11.79□□□□□ -0.52
SS18-213ENST00000579640 SENP6Q9GZR1 1112 aaPredicted RBP11.79□□□□□ -0.52
SS18-213ENST00000579640 CCDC113Q9H0I3 377 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 RBSNQ9H1K0 784 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 ADAMTS10Q9H324 1103 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 IFT122Q9HBG6 1241 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 PRMT7Q9NVM4 692 aaPredicted RBP11.79□□□□□ -0.52
SS18-213ENST00000579640 GOLGA6L3A6NEY3 463 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 TLR3O15455 904 aaKnown RBP11.79□□□□□ -0.52
SS18-213ENST00000579640 PIGRP01833 764 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 RPL13P26373 211 aaKnown RBP11.79□□□□□ -0.52
SS18-213ENST00000579640 CRYBB1P53674 252 aaPredicted RBP11.79□□□□□ -0.52
SS18-213ENST00000579640 MRPS6P82932 125 aaKnown RBP11.79□□□□□ -0.52
SS18-213ENST00000579640 MBTD1Q05BQ5 628 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 MYBPC2Q14324 1141 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 FAM187BQ17R55 369 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 ANKRD40Q6AI12 368 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 SLC39A5Q6ZMH5 540 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 TAS1R3Q7RTX0 852 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 CCDC155Q8N6L0 562 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 RNF214Q8ND24 703 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 TMEM174Q8WUU8 243 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 FZD8Q9H461 694 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 TRMT13Q9NUP7 481 aaKnown RBP11.79□□□□□ -0.52
SS18-213ENST00000579640 NFE2L3Q9Y4A8 694 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 TRPV2Q9Y5S1 764 aa11.79□□□□□ -0.52
SS18-213ENST00000579640 ZMYM2Q9UBW7 1377 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 TRIM49BA6NDI0 452 aa11.78□□□□□ -0.52
SS18-213ENST00000579640 INO80B-WBP1J3KQ70 363 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms