RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 ZNF410Q86VK4 478 aa8.19□□□□□ -1.1
SCFD1-222ENST00000556768 FAM228AQ86W67 206 aa8.19□□□□□ -1.1
SCFD1-222ENST00000556768 CCDC83Q8IWF9 413 aa8.19□□□□□ -1.1
SCFD1-222ENST00000556768 TPH2Q8IWU9 490 aa8.19□□□□□ -1.1
SCFD1-222ENST00000556768 C4orf19Q8IY42 314 aa8.19□□□□□ -1.1
SCFD1-222ENST00000556768 MICAL1Q8TDZ2 1067 aa8.19□□□□□ -1.1
SCFD1-222ENST00000556768 TMEM40Q8WWA1 233 aa8.19□□□□□ -1.1
SCFD1-222ENST00000556768 TCP11Q8WWU5 503 aa8.19□□□□□ -1.1
SCFD1-222ENST00000556768 P2RX5Q93086 422 aa8.19□□□□□ -1.1
SCFD1-222ENST00000556768 TMX1Q9H3N1 280 aa8.19□□□□□ -1.1
SCFD1-222ENST00000556768 NSUN3Q9H649 340 aaKnown RBP8.19□□□□□ -1.1
SCFD1-222ENST00000556768 TTC12Q9H892 705 aaPredicted RBP8.19□□□□□ -1.1
SCFD1-222ENST00000556768 CHST12Q9NRB3 414 aa8.19□□□□□ -1.1
SCFD1-222ENST00000556768 PUF60Q9UHX1 559 aaKnown RBP8.19□□□□□ -1.1
SCFD1-222ENST00000556768 LHX6Q9UPM6 363 aa8.19□□□□□ -1.1
SCFD1-222ENST00000556768 TET1Q8NFU7 2136 aa8.19□□□□□ -1.1
SCFD1-222ENST00000556768 TRIP12Q14669 1992 aaPredicted RBP8.19□□□□□ -1.1
SCFD1-222ENST00000556768 TBKBP1A7MCY6 615 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 ASAP2O43150 1006 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 JAK2O60674 1132 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 EOMESO95936 686 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 HOXB3P14651 431 aaPredicted RBP8.18□□□□□ -1.1
SCFD1-222ENST00000556768 ATP2B1P20020 1258 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 TXKP42681 527 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 BMS1Q14692 1282 aaKnown RBP8.18□□□□□ -1.1
SCFD1-222ENST00000556768 PUS10Q3MIT2 529 aaKnown RBP8.18□□□□□ -1.1
SCFD1-222ENST00000556768 ANO5Q75V66 913 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 RNF169Q8NCN4 708 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 NEK9Q8TD19 979 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 PSPC1Q8WXF1 523 aaKnown RBP8.18□□□□□ -1.1
SCFD1-222ENST00000556768 RSPH1Q8WYR4 309 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 TSC1Q92574 1164 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 LXNQ9BS40 222 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 ADAMTS10Q9H324 1103 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 UBE2ZQ9H832 354 aaPredicted RBP8.18□□□□□ -1.1
SCFD1-222ENST00000556768 VAV3Q9UKW4 847 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 SCN5AQ14524 2016 aa8.18□□□□□ -1.1
SCFD1-222ENST00000556768 BDP1A6H8Y1 2624 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 A0A0U1RQF3 1178 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 C9IYK1 514 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 EML1O00423 815 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 DTNBO60941 627 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 LARGE1O95461 756 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 BMP1P13497 986 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 KCNA5P22460 613 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 FAM189BP81408 668 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 CYP4A11Q02928 519 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 KRT17Q04695 432 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 MXD4Q14582 209 aaPredicted RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 RABEP1Q15276 862 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 XKR9Q5GH70 373 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 TWF2Q6IBS0 349 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 CATSPER4Q7RTX7 472 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 THNSL1Q8IYQ7 743 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 CRIPAKQ8N1N5 446 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 LINC01465Q8N7H1 131 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 ERMNQ8TAM6 284 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 LINC01599Q8WXQ3 324 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 HAS1Q92839 578 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 ZNF668Q96K58 619 aaPredicted RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 NLRP4Q96MN2 994 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 SH2D3AQ9BRG2 576 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 TMEM117Q9H0C3 514 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 FOXP1Q9H334 677 aaPredicted RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 ALG13Q9NP73 1137 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 RGL1Q9NZL6 768 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 NOL7Q9UMY1 257 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 PLAGL2Q9UPG8 496 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 MRPL42Q9Y6G3 142 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 TANC1Q9C0D5 1861 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 A0A087WZ62 844 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 IGKV6-21A0A0C4DH24 114 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 FSD2A1L4K1 749 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 MGEA5O60502 916 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 SLITRK3O94933 977 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 SRGAP2CP0DJJ0 459 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 MCM7P33993 719 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 ALDH7A1P49419 539 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 KCNQ1P51787 676 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 NPEPPSP55786 919 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 GUCY1B3Q02153 619 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 UBE3AQ05086 875 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 ORC2Q13416 577 aaPredicted RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 TFDP1Q14186 410 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 CTTNQ14247 550 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 EARS2Q5JPH6 523 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 FAM102BQ5T8I3 360 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 PLA2G4FQ68DD2 849 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 KLHL23Q8NBE8 558 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 FBXO18Q8NFZ0 1043 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 PRPF31Q8WWY3 499 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 PABPC5Q96DU9 382 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 DYDC2Q96IM9 177 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 EIF2AK1Q9BQI3 630 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 FDXACB1Q9BRP7 624 aaPredicted RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 RAB34Q9BZG1 259 aa8.17□□□□□ -1.1
SCFD1-222ENST00000556768 RC3H2Q9HBD1 1191 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 TYW1Q9NV66 732 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 PIN4Q9Y237 131 aaKnown RBP8.17□□□□□ -1.1
SCFD1-222ENST00000556768 COL4A3BPQ9Y5P4 624 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms