RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TKFCQ3LXA3 575 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 PALB2Q86YC2 1186 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 EIF1ADQ8N9N8 165 aaKnown RBP14.25□□□□□ -0.13
LDLR-203ENST00000535915 PRPF38AQ8NAV1 312 aaKnown RBP14.25□□□□□ -0.13
LDLR-203ENST00000535915 LMO3Q8TAP4 145 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 ARHGEF26Q96DR7 871 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 ACCSQ96QU6 501 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 THAP2Q9H0W7 228 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 SCAF8Q9UPN6 1271 aaKnown RBP14.25□□□□□ -0.13
LDLR-203ENST00000535915 PLAAQ9Y263 795 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 DAAM1Q9Y4D1 1078 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 WDR81Q562E7 1941 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 FGGP02679 453 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 ECHS1P30084 290 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 HSPA9P38646 679 aaKnown RBP14.25□□□□□ -0.13
LDLR-203ENST00000535915 QARSP47897 775 aaKnown RBP14.25□□□□□ -0.13
LDLR-203ENST00000535915 PRPF4BQ13523 1007 aaKnown RBP14.25□□□□□ -0.13
LDLR-203ENST00000535915 MTMR1Q13613 665 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 ALCAMQ13740 583 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 KIF22Q14807 665 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 KCTD19Q17RG1 926 aaPredicted RBP14.25□□□□□ -0.13
LDLR-203ENST00000535915 MCF2L2Q86YR7 1114 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 CCDC26Q8TAB7 109 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 CLEC4DQ8WXI8 215 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 PSMD1Q99460 953 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 AGPAT1Q99943 283 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 CBWD1Q9BRT8 395 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 RABEP2Q9H5N1 569 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 YY1AP1Q9H869 796 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 AGO4Q9HCK5 861 aaKnown RBP14.25□□□□□ -0.13
LDLR-203ENST00000535915 EIF3HO15372 352 aaKnown RBP eCLIP14.24□□□□□ -0.13
LDLR-203ENST00000535915 PLS3P13797 630 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 GCLMP48507 274 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 ATP1A2P50993 1020 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 SKOR1P84550 965 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 PPATQ06203 517 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 NIPA1Q7RTP0 329 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 CD302Q8IX05 232 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 SLITRK6Q9H5Y7 841 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 DBR1Q9UK59 544 aaKnown RBP14.24□□□□□ -0.13
LDLR-203ENST00000535915 GRIN2DO15399 1336 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 FER1L6Q2WGJ9 1857 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 ANKRD62A6NC57 917 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 MAPTP10636 758 aaKnown RBP14.24□□□□□ -0.13
LDLR-203ENST00000535915 MRPS9P82933 396 aaKnown RBP14.24□□□□□ -0.13
LDLR-203ENST00000535915 PPP3CAQ08209 521 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 NBPF9Q3BBW0 867 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 PCNX4Q63HM2 1172 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 ARHGEF19Q8IW93 802 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 BCAS4Q8TDM0 211 aa14.24□□□□□ -0.13
LDLR-203ENST00000535915 RAVER2Q9HCJ3 691 aaKnown RBP14.24□□□□□ -0.13
LDLR-203ENST00000535915 TMEM150BA6NC51 233 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 TTI1O43156 1089 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 EIF2AK2P19525 551 aaKnown RBP14.23□□□□□ -0.13
LDLR-203ENST00000535915 YWHABP31946 246 aaKnown RBP14.23□□□□□ -0.13
LDLR-203ENST00000535915 TBC1D10BQ4KMP7 808 aaPredicted RBP14.23□□□□□ -0.13
LDLR-203ENST00000535915 CEP85LQ5SZL2 805 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 NAA35Q5VZE5 725 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 ZNF772Q68DY9 489 aaPredicted RBP14.23□□□□□ -0.13
LDLR-203ENST00000535915 HAUS6Q7Z4H7 955 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 XXYLT1Q8NBI6 393 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 SLC20A1Q8WUM9 679 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 CELF4Q9BZC1 486 aaKnown RBP14.23□□□□□ -0.13
LDLR-203ENST00000535915 HSPBP1Q9NZL4 362 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 UBIAD1Q9Y5Z9 338 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 RGPD3A6NKT7 1758 aaPredicted RBP14.23□□□□□ -0.13
LDLR-203ENST00000535915 RGPD4Q7Z3J3 1758 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 DDX3YO15523 660 aaKnown RBP14.23□□□□□ -0.13
LDLR-203ENST00000535915 DAPK3O43293 454 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 HSD17B3P37058 310 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 USP8P40818 1118 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 PDCLQ13371 301 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 SF3B2Q13435 895 aaKnown RBP14.23□□□□□ -0.13
LDLR-203ENST00000535915 DGKZQ13574 1117 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 ZSWIM2Q8NEG5 633 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 LRRC45Q96CN5 670 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 NEUROG2Q9H2A3 272 aa14.23□□□□□ -0.13
LDLR-203ENST00000535915 GEMIN8Q9NWZ8 242 aaKnown RBP14.23□□□□□ -0.13
LDLR-203ENST00000535915 GOLGA6L10A6NI86 522 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 A6NNZ2 444 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 WNT10BO00744 389 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 WDR46O15213 610 aaKnown RBP14.22□□□□□ -0.13
LDLR-203ENST00000535915 MYCLP12524 364 aaPredicted RBP14.22□□□□□ -0.13
LDLR-203ENST00000535915 CCT5P48643 541 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 PEX3P56589 373 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 SPP2Q13103 211 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 TUBB8Q3ZCM7 444 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 DCAF12L1Q5VU92 463 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 MTMR14Q8NCE2 650 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 AGBL3Q8NEM8 1001 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 SYTL5Q8TDW5 730 aaPredicted RBP14.22□□□□□ -0.13
LDLR-203ENST00000535915 RNPC3Q96LT9 517 aaKnown RBP14.22□□□□□ -0.13
LDLR-203ENST00000535915 TBC1D22BQ9NU19 505 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 STK32BQ9NY57 414 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 TCEAL9Q9UHQ7 104 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 COG5Q9UP83 839 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 DIS3Q9Y2L1 958 aaKnown RBP14.22□□□□□ -0.13
LDLR-203ENST00000535915 UTP11Q9Y3A2 253 aaKnown RBP14.22□□□□□ -0.13
LDLR-203ENST00000535915 SLC16A4O15374 487 aa14.22□□□□□ -0.13
LDLR-203ENST00000535915 UGCGQ16739 394 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms