RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 CEP89Q96ST8 783 aa15.43■□□□□ 0.06
C9orf3-221ENST00000489562 C7orf25Q9BPX7 421 aa15.43■□□□□ 0.06
C9orf3-221ENST00000489562 TRIM9Q9C026 710 aa15.43■□□□□ 0.06
C9orf3-221ENST00000489562 HDAC6Q9UBN7 1215 aa15.43■□□□□ 0.06
C9orf3-221ENST00000489562 GTF2IRD1Q9UHL9 959 aa15.43■□□□□ 0.06
C9orf3-221ENST00000489562 MBLAC1A4D2B0 266 aaPredicted RBP15.42■□□□□ 0.06
C9orf3-221ENST00000489562 TRAK2O60296 914 aa15.42■□□□□ 0.06
C9orf3-221ENST00000489562 MAFO75444 373 aaPredicted RBP15.42■□□□□ 0.06
C9orf3-221ENST00000489562 C22orf31O95567 290 aa15.42■□□□□ 0.06
C9orf3-221ENST00000489562 KRT18P05783 430 aaKnown RBP15.42■□□□□ 0.06
C9orf3-221ENST00000489562 AFMP43652 599 aa15.42■□□□□ 0.06
C9orf3-221ENST00000489562 EMC2Q15006 297 aa15.42■□□□□ 0.06
C9orf3-221ENST00000489562 CCDC183Q5T5S1 534 aa15.42■□□□□ 0.06
C9orf3-221ENST00000489562 LMBR1Q8WVP7 490 aa15.42■□□□□ 0.06
C9orf3-221ENST00000489562 TCP11Q8WWU5 503 aa15.42■□□□□ 0.06
C9orf3-221ENST00000489562 DDX12PQ92771 950 aa15.42■□□□□ 0.06
C9orf3-221ENST00000489562 MTRQ99707 1265 aa15.42■□□□□ 0.06
C9orf3-221ENST00000489562 RUSC1Q9BVN2 902 aa15.42■□□□□ 0.06
C9orf3-221ENST00000489562 PDLIM7Q9NR12 457 aa15.42■□□□□ 0.06
C9orf3-221ENST00000489562 TUBE1Q9UJT0 475 aa15.42■□□□□ 0.06
C9orf3-221ENST00000489562 ODF2LQ9ULJ1 636 aa15.42■□□□□ 0.06
C9orf3-221ENST00000489562 IGKV6-21A0A0C4DH24 114 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 MYMKA6NI61 221 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 TBCAO75347 108 aaKnown RBP15.41■□□□□ 0.06
C9orf3-221ENST00000489562 SMC2O95347 1197 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 RPLP2P05387 115 aaKnown RBP15.41■□□□□ 0.06
C9orf3-221ENST00000489562 KLRC1P26715 233 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 TMOD1P28289 359 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 DNM2P50570 870 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 IGBP1P78318 339 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 ADAM17P78536 824 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 MDM2Q00987 491 aaPredicted RBP15.41■□□□□ 0.06
C9orf3-221ENST00000489562 ARSHQ5FYA8 562 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 FAM47CQ5HY64 1035 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 MTHFD1LQ6UB35 978 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 SLC43A3Q8NBI5 491 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 KIFAP3Q92845 792 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 CCDC47Q96A33 483 aaKnown RBP15.41■□□□□ 0.06
C9orf3-221ENST00000489562 DRC1Q96MC2 740 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 SH2D3AQ9BRG2 576 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 SETD4Q9NVD3 440 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 PCDHA2Q9Y5H9 948 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 GRIN2DO15399 1336 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 MROH7Q68CQ1 1323 aa15.41■□□□□ 0.06
C9orf3-221ENST00000489562 PVALEFA0A1B0GWK0 134 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 ARVCFO00192 962 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 COL6A1P12109 1028 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 MNX1P50219 401 aaPredicted RBP15.4■□□□□ 0.06
C9orf3-221ENST00000489562 RTP1P59025 263 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 ASIC1P78348 528 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 GIT2Q14161 759 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 MARCH8Q5T0T0 291 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 IER5Q5VY09 327 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 TAF2Q6P1X5 1199 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 CCDC65Q8IXS2 484 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 GRAMD1CQ8IYS0 662 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 ZNF710Q8N1W2 664 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 TRAPPC12Q8WVT3 735 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 STAMQ92783 540 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 REEP2Q9BRK0 252 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 C17orf75Q9HAS0 396 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 XPNPEP1Q9NQW7 623 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 KCNG1Q9UIX4 513 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 COL4A3BPQ9Y5P4 624 aa15.4■□□□□ 0.06
C9orf3-221ENST00000489562 HIP1RO75146 1068 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 GAP43P17677 238 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 DPYDQ12882 1025 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 CUL4BQ13620 913 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 C1orf53Q5VUE5 145 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 EFCAB12Q6NXP0 572 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 CAVIN1Q6NZI2 390 aaKnown RBP15.39■□□□□ 0.05
C9orf3-221ENST00000489562 UNC13DQ70J99 1090 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 DYMQ7RTS9 669 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 NECAB2Q7Z6G3 386 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 LINC01465Q8N7H1 131 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 PSPC1Q8WXF1 523 aaKnown RBP15.39■□□□□ 0.05
C9orf3-221ENST00000489562 SMARCE1Q969G3 411 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 DNAJC19Q96DA6 116 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 GSDMAQ96QA5 445 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 MAP7D2Q96T17 732 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 GTPBP4Q9BZE4 634 aaKnown RBP15.39■□□□□ 0.05
C9orf3-221ENST00000489562 SENP6Q9GZR1 1112 aaPredicted RBP15.39■□□□□ 0.05
C9orf3-221ENST00000489562 C11orf49Q9H6J7 331 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 RMND1Q9NWS8 449 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 LARSQ9P2J5 1176 aaKnown RBP15.39■□□□□ 0.05
C9orf3-221ENST00000489562 SEL1LQ9UBV2 794 aa15.39■□□□□ 0.05
C9orf3-221ENST00000489562 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.38■□□□□ 0.05
C9orf3-221ENST00000489562 SMIM35A0A1B0GVV1 85 aa15.38■□□□□ 0.05
C9orf3-221ENST00000489562 FRMD3A2A2Y4 597 aa15.38■□□□□ 0.05
C9orf3-221ENST00000489562 ASAP2O43150 1006 aa15.38■□□□□ 0.05
C9orf3-221ENST00000489562 FAM13AO94988 1023 aa15.38■□□□□ 0.05
C9orf3-221ENST00000489562 LETM1O95202 739 aaPredicted RBP15.38■□□□□ 0.05
C9orf3-221ENST00000489562 CYP2C9P11712 490 aa15.38■□□□□ 0.05
C9orf3-221ENST00000489562 IDEP14735 1019 aa15.38■□□□□ 0.05
C9orf3-221ENST00000489562 CDK7P50613 346 aa15.38■□□□□ 0.05
C9orf3-221ENST00000489562 ZNF131P52739 623 aa15.38■□□□□ 0.05
C9orf3-221ENST00000489562 CDC42EP1Q00587 391 aa15.38■□□□□ 0.05
C9orf3-221ENST00000489562 PNOCQ13519 176 aa15.38■□□□□ 0.05
C9orf3-221ENST00000489562 MXD4Q14582 209 aaPredicted RBP15.38■□□□□ 0.05
C9orf3-221ENST00000489562 KCNB1Q14721 858 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms