RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 SLC9A1P19634 815 aa16.27■□□□□ 0.2
CUX1-214ENST00000550008 LACTBP83111 547 aaPredicted RBP16.27■□□□□ 0.2
CUX1-214ENST00000550008 NYAP1Q6ZVC0 841 aa16.27■□□□□ 0.2
CUX1-214ENST00000550008 IL17RAQ96F46 866 aa16.27■□□□□ 0.2
CUX1-214ENST00000550008 ZNRF3Q9ULT6 936 aa16.27■□□□□ 0.2
CUX1-214ENST00000550008 MYO3BQ8WXR4 1341 aa16.27■□□□□ 0.19
CUX1-214ENST00000550008 DENND3A2RUS2 1198 aa16.27■□□□□ 0.19
CUX1-214ENST00000550008 RSPH10B2B2RC85 870 aa16.27■□□□□ 0.19
CUX1-214ENST00000550008 HIP1RO75146 1068 aa16.27■□□□□ 0.19
CUX1-214ENST00000550008 RSPH10BP0C881 870 aa16.27■□□□□ 0.19
CUX1-214ENST00000550008 SSTR3P32745 418 aaPredicted RBP16.27■□□□□ 0.19
CUX1-214ENST00000550008 QARSP47897 775 aaKnown RBP16.27■□□□□ 0.19
CUX1-214ENST00000550008 DRAP1Q14919 205 aaPredicted RBP16.27■□□□□ 0.19
CUX1-214ENST00000550008 STMN4Q9H169 189 aaPredicted RBP16.27■□□□□ 0.19
CUX1-214ENST00000550008 RPAP3Q9H6T3 665 aaPredicted RBP16.27■□□□□ 0.19
CUX1-214ENST00000550008 BMP6P22004 513 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 YARSP54577 528 aaKnown RBP16.26■□□□□ 0.19
CUX1-214ENST00000550008 ZBTB16Q05516 673 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 ZRSR2Q15696 482 aaKnown RBP16.26■□□□□ 0.19
CUX1-214ENST00000550008 BSPRYQ5W0U4 402 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 MICALL2Q8IY33 904 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 THAP12O43422 761 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 VSNL1P62760 191 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 PPP2R5DQ14738 602 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 PASD1Q8IV76 773 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 REXO1L1PQ8IX06 675 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 XXYLT1Q8NBI6 393 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 FAM213AQ9BRX8 229 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 DUSP10Q9Y6W6 482 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 FGGP02679 453 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 MAPK4P31152 587 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 GTF2A1P52655 376 aaPredicted RBP16.26■□□□□ 0.19
CUX1-214ENST00000550008 FAM47CQ5HY64 1035 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 NUDT12Q9BQG2 462 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 NKIRAS1Q9NYS0 192 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 WDR64B1ANS9 1081 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 SLCO1A2P46721 670 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 BAATQ14032 418 aaPredicted RBP16.26■□□□□ 0.19
CUX1-214ENST00000550008 CYP2W1Q8TAV3 490 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 NSRP1Q9H0G5 558 aaKnown RBP16.26■□□□□ 0.19
CUX1-214ENST00000550008 SAMD15Q9P1V8 674 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 AKT3Q9Y243 479 aa16.26■□□□□ 0.19
CUX1-214ENST00000550008 RGS16O15492 202 aaPredicted RBP16.25■□□□□ 0.19
CUX1-214ENST00000550008 CATSPER3Q86XQ3 398 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 FERMT1Q9BQL6 677 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 VPS37BQ9H9H4 285 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 ZNF148Q9UQR1 794 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 EIF3CLB5ME19 914 aaKnown RBP16.25■□□□□ 0.19
CUX1-214ENST00000550008 P4HBP07237 508 aaKnown RBP16.25■□□□□ 0.19
CUX1-214ENST00000550008 ERVK-24P63145 666 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 MIS18BP1Q6P0N0 1132 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 RSBN1LQ6PCB5 846 aaPredicted RBP16.25■□□□□ 0.19
CUX1-214ENST00000550008 ANKS4BQ8N8V4 417 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 FAM71BQ8TC56 605 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 MS4A14Q96JA4 679 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 EIF3CQ99613 913 aaKnown RBP16.25■□□□□ 0.19
CUX1-214ENST00000550008 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.25■□□□□ 0.19
CUX1-214ENST00000550008 NOD1Q9Y239 953 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 POLRMTO00411 1230 aaKnown RBP16.25■□□□□ 0.19
CUX1-214ENST00000550008 KRT15P19012 456 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 IFNAR2P48551 515 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 BRDTQ58F21 947 aaPredicted RBP16.25■□□□□ 0.19
CUX1-214ENST00000550008 OSBPL9Q96SU4 736 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 DDX47Q9H0S4 455 aaKnown RBP16.25■□□□□ 0.19
CUX1-214ENST00000550008 CNOT7Q9UIV1 285 aaKnown RBP16.25■□□□□ 0.19
CUX1-214ENST00000550008 DAAM1Q9Y4D1 1078 aa16.25■□□□□ 0.19
CUX1-214ENST00000550008 TFRCP02786 760 aaKnown RBP16.24■□□□□ 0.19
CUX1-214ENST00000550008 PSAPP07602 524 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 PDXDC1Q6P996 788 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 DPP9Q86TI2 863 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 ZNF710Q8N1W2 664 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 CABS1Q96KC9 395 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 VCPKMTQ9H867 229 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 EYA4O95677 639 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 TNNC2P02585 160 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 NPEPPSP55786 919 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 PLA2G4FQ68DD2 849 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 CEP57Q86XR8 500 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 EMSYQ7Z589 1322 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 KNDC1Q76NI1 1749 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 SYNJ2BP-COX16A0A087WUM0 186 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 MED24O75448 989 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 ORC2Q13416 577 aaPredicted RBP16.24■□□□□ 0.19
CUX1-214ENST00000550008 NOA1Q8NC60 698 aaKnown RBP16.24■□□□□ 0.19
CUX1-214ENST00000550008 ZNF526Q8TF50 670 aaPredicted RBP16.24■□□□□ 0.19
CUX1-214ENST00000550008 OTUD5Q96G74 571 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 CAPS2Q9BXY5 557 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 COX16Q9P0S2 106 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 SHMT1P34896 483 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 CCT5P48643 541 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 DHX9Q08211 1270 aaKnown RBP16.24■□□□□ 0.19
CUX1-214ENST00000550008 HAUS6Q7Z4H7 955 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 MED4Q9NPJ6 270 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 SERPINA10Q9UK55 444 aa16.24■□□□□ 0.19
CUX1-214ENST00000550008 ENTPD3O75355 529 aa16.23■□□□□ 0.19
CUX1-214ENST00000550008 IL1R1P14778 569 aa16.23■□□□□ 0.19
CUX1-214ENST00000550008 DYNLT1P63172 113 aa16.23■□□□□ 0.19
CUX1-214ENST00000550008 MKRN4PQ13434 485 aaPredicted RBP16.23■□□□□ 0.19
CUX1-214ENST00000550008 DNAAF5Q86Y56 855 aa16.23■□□□□ 0.19
CUX1-214ENST00000550008 KBTBD4Q9NVX7 518 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms